Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq2029 551 6e-152 seq3507 86.0 6e-12 >seq2029 Length=64692 Score = 551 bits (610), Expect = 6e-152 Identities = 741/1030 (72%), Gaps = 1/1030 (0%) Strand=Plus/Minus Query 9814 GTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGG 9873 |||||| | |||||||||||||| || || || || |||||||| || ||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 9874 ACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTT 9933 ||||| | || || ||||| ||||||||| ||||||| ||| |||| || ||||| || Sbjct 63319 GTTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACATT 63260 Query 9934 TGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCT 9993 ||| || |||||| ||||| || | || | | || | || || ||||||| | Sbjct 63259 TGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAATTTCTT 63200 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || || || || || || || || || ||||||||||||| | | | |||||||| Sbjct 63199 AACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGGGG 63140 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 || || |||| || ||||| || ||| ||| ||||| || || ||| |||| || Sbjct 63139 CCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTCGT 63080 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAG 10173 || || ||||| | || | | || || |||||| | || || ||||| | || | Sbjct 63079 AGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCTCG 63020 Query 10174 ATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT 10233 | | | ||| || || || || || || || ||||||| || ||| ||||||| || Sbjct 63019 TTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTTCGT 62960 Query 10234 CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGG 10293 ||| ||||| || || ||| | || || || ||||||||||||| || ||||| || Sbjct 62959 TTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTTTGG 62900 Query 10294 CGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 10353 || ||||| |||||||| || | | || | || ||||| ||||| ||||| | || Sbjct 62899 TGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTTAAA 62840 Query 10354 TCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCA 10413 || |||||||||||||| || |||||| |||| |||| ||| | || | || || || Sbjct 62839 CCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCATTCA 62780 Query 10414 CGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGC 10473 || | ||||||||||||||||||| | ||||||| || |||||||| ||| || Sbjct 62779 TGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGC 62720 Query 10474 TTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 10533 ||| | ||||||| |||||| || || || ||||| ||||||||| | || ||||| Sbjct 62719 GTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTGGTC 62660 Query 10534 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 10593 || || ||||| | |||||| |||||||| ||| | || ||||||||||| ||||| Sbjct 62659 TCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTTTGT 62600 Query 10594 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 10653 ||||| | || ||||||| | ||||||| | | ||||| ||| | || | || Sbjct 62599 TCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCTTTAAACTTACG 62540 Query 10654 TGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 10713 |||||||||||| || || ||||| || | || |||||||||| |||||||| || || Sbjct 62539 TGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAACTTT 62480 Query 10714 CTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCA 10773 |||||| || ||||||||| | ||||||||| ||||||| |||||||| | || || Sbjct 62479 CTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCA 62420 Query 10774 ACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGAT- 10832 || || |||| |||| ||||| || || ||| | || | || || || || | || Sbjct 62419 GCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAATG 62360 Query 10833 ATTCCTTAGT 10842 ||| ||||| Sbjct 62359 GTTCGTTAGT 62350 Score = 347 bits (384), Expect = 1e-90 Identities = 359/470 (76%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 8770 AACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTC 8829 ||||| || |||||||| ||||| ||||| || ||||| ||||| || || || || | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 8830 TTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACC 8889 || || || ||||| |||||||| || |||||||| || ||||||| || || || | | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 8890 GAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCC 8949 || || ||| | || ||||| |||||||||||||| |||||||||||||| ||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 8950 GCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGC 9009 |||||||||||||| ||||| || || |||||||| || ||||||||||| ||| | Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 9010 TTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTC 9069 || ||||||||| | ||||| ||||| || || || || |||||||| || | || | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 9070 TCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAA 9129 || || |||||||||||| | ||||| |||||||||||||| || || | || |||| Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 9130 GGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTC 9189 || || || | ||||| ||||| ||| | | ||||| || || ||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 9190 ATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTGCTGA 9239 ||||| || | ||||| |||||||||||| | || | |||| || ||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGCGGTTGTTGA 30831 Score = 345 bits (382), Expect = 4e-90 Identities = 395/528 (75%), Gaps = 6/528 (1%) Strand=Plus/Minus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 |||||| || ||||| ||| || | || || || || |||| |||||||| || | Sbjct 32747 TTTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 32688 Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATT---TGCTTCATTACCGCATTCGTTGCTGC 8363 ||||| || || | | | || || || || || || | ||| || | || || Sbjct 32687 AATGATTCCTACTTTATTAACTGCAAC--TTCAGTGTTT-ATCATCGCTTTTATCGCAGC 32631 Query 8364 TCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAA 8423 |||||||| || ||||| || ||||| || |||||| |||| || || | ||||| || Sbjct 32630 ACCTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAA 32571 Query 8424 CAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCC 8483 ||||||||| |||||||| || |||| | ||||||||||| || | || |||||||| Sbjct 32570 CAACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCC 32511 Query 8484 CATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGT 8543 || |||||||| ||||||||||| || ||| | |||||||||||||||||||| ||| | Sbjct 32510 TATTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTAT 32451 Query 8544 AGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTA 8603 |||| || ||| || | || ||| | |||| ||||||||||| |||||| | |||| Sbjct 32450 CGTTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTT 32391 Query 8604 CCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTC 8663 ||| | || |||||||| ||||| ||||| ||||| || || ||||| || || | Sbjct 32390 CCGTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAAC 32331 Query 8664 TGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGG 8723 ||||||||| | |||| || | ||||||||||| |||||||||||||||||| | || Sbjct 32330 AGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGG 32271 Query 8724 TATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAA 8771 ||| || ||||| || |||| ||| | || ||||| |||||||| || Sbjct 32270 TATTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 >seq3507 Length=10852 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 15401 TCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAA 15460 |||||| ||||||||||||||||||| |||| ||||||| ||||| | | ||||||| | Sbjct 9031 TCGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGA 8972 Query 15461 ATCCTGTATTCCCGA 15475 ||||||| |||||| Sbjct 8971 ATCCTGTCATCCCGA 8957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516456758400000