Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 610 7e-170
seq3507 93.3 5e-14
>seq2029
Length=64692
Score = 610 bits (676), Expect = 7e-170
Identities = 750/1020 (74%), Gaps = 12/1020 (1%)
Strand=Plus/Minus
Query 162116 GTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGG 162175
||||||||| |||| ||||||||| | ||||||||||||||||| || ||||| ||
Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320
Query 162176 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTT 162235
| ||| | || || ||||| |||||||| ||||| |||||| |||| || ||||| ||
Sbjct 63319 GTTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACATT 63260
Query 162236 CGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTC 162294
|| || |||||||||||| || | || | ||| ||| | || || || || ||||
Sbjct 63259 TGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA--TTTC 63202
Query 162295 TTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGG 162353
||| |||| || ||||||||||||||| | ||||||||||||| | | |||| |||
Sbjct 63201 TTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGG 63142
Query 162354 GGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTT 162413
|| || || ||||||| || || | || |||||||||||||| || || ||||||||
Sbjct 63141 GGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTC 63082
Query 162414 GTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCA 162473
|| || || ||||| | ||| |||| || ||||| |||||||| || |||||| | ||
Sbjct 63081 GTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCT 63022
Query 162474 CGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGT 162529
|| || ||| ||||||| || || || |||||||| || | ||| ||| ||||
Sbjct 63021 CGT----TCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGT 62966
Query 162530 ATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTC 162589
|||||| ||| || || || || || || || ||||| |||||||| |||||
Sbjct 62965 TTTCGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAG 62906
Query 162590 GTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGAC 162649
|| || || || ||||| ||||| || | | || | ||||| ||||||||||||||
Sbjct 62905 TTTTGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGAC 62846
Query 162650 GCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGC 162709
|||| ||||| || |||||||| ||||| ||| | || || | ||| || || | ||
Sbjct 62845 TTTAAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGC 62786
Query 162710 TATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTT 162769
|||||||| | || || ||||| ||||| | |||||||| || |||||||| ||
Sbjct 62785 CATTCATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATT 62726
Query 162770 TAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTT 162829
|| ||| || | || || | |||||||| || || ||||| ||||| ||| | ||
Sbjct 62725 CCGTGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATT 62666
Query 162830 CTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCT 162889
||||| || || || ||| | |||||| ||| || |||||||| || |||||||||||
Sbjct 62665 TTGGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCT 62606
Query 162890 CTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAA 162949
|||||||| || | || || |||| ||| |||| ||| | | || || ||| | ||
Sbjct 62605 TTTTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCTTTAAA 62546
Query 162950 TCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGA 163009
| ||||||||||| || || || |||||| |||| || |||||||| || || |||||
Sbjct 62545 CTTACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGA 62486
Query 163010 GACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGT 163069
|| |||||||| || || || ||| | || ||||| |||| || ||| | || |
Sbjct 62485 AACTTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCA 62426
Query 163070 GGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129
|| || |||||||| || |||| |||||||| ||||| || ||| | || ||||||||
Sbjct 62425 AGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 62366
Score = 390 bits (432), Expect = 1e-103
Identities = 356/449 (79%), Gaps = 0/449 (0%)
Strand=Plus/Minus
Query 161398 AACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTG 161457
|||||||| |||||||| ||||||||||| ||||| || ||||| ||||| ||||| |
Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241
Query 161458 TTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAAC 161517
||| ||| ||||||||||| || || || ||||| || |||||||||| || || |||
Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181
Query 161518 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCT 161577
|| || ||| | |||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121
Query 161578 GCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCG 161637
|| || || |||||||||||| | ||||||||||||||||| || |||||||| || ||
Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061
Query 161638 CTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTA 161697
| || |||||| | ||||||||||| |||||||| || ||||| ||||| | || |
Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001
Query 161698 AGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAG 161757
|| ||||| |||||| | |||||||||||||||||||| || | || ||| ||
Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941
Query 161758 GGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTG 161817
|| ||||| ||||| ||||| ||| || |||||||||| ||||| ||||||||
Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881
Query 161818 ATGCACGAGCGCAATGCTCACAACTTCCC 161846
||||| ||||| || ||||||||||||||
Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852
Score = 370 bits (410), Expect = 1e-97
Identities = 400/526 (76%), Gaps = 4/526 (1%)
Strand=Plus/Minus
Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935
|||||| | ||||| || ||||| || ||||| | || | |||||||| || || |
Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687
Query 160936 ATGATTCCCTGCTTGCTCGCTGCTAC--CATTTGTTTCATCATTGCCTTCGTTGGTGCTC 160993
|||||||| || | |||| || || | |||| ||||| || || | | || |
Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGT-GTTT-ATCATCGCTTTTATCGCAGCAC 32629
Query 160994 CCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 161053
| ||||| || ||||| || || ||||| || || ||||||| || | || |||||||
Sbjct 32628 CTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACA 32569
Query 161054 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 161113
||||||| ||||||||| |||| ||| |||||||||| |||||| | || |||||||| |
Sbjct 32568 ACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTA 32509
Query 161114 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 161173
| ||||||||||| ||| ||||||||| | |||||||||||||||| |||||| | |
Sbjct 32508 TTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCG 32449
Query 161174 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 161233
| | || ||| | | || |||| | ||||||||||||||||||||||| | |||| ||
Sbjct 32448 TTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 32389
Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293
|| | || |||||||| |||||| || || ||||| || || || |||||||| | |
Sbjct 32388 GTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAG 32329
Query 161294 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 161353
| || ||| | |||| || |||||||||||||||||||||||| |||||| | || |
Sbjct 32328 CTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 32269
Query 161354 TCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAA 161399
| |||||||| || |||| |||| | || |||||||| ||||| ||
Sbjct 32268 TTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223
>seq3507
Length=10852
Score = 93.3 bits (102), Expect = 5e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 157685 TTTTACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGT 157744
|||| |||| |||||||||| |||||||||| || ||||||| || |||||||||||
Sbjct 9035 TTTTTCGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGT 8976
Query 157745 TCGAATCCTGTCACCCCGA 157763
||||||||||||| |||||
Sbjct 8975 TCGAATCCTGTCATCCCGA 8957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547722551376000
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