Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq2029 304 4e-78 >seq2029 Length=64692 Score = 304 bits (336), Expect = 4e-78 Identities = 383/526 (73%), Gaps = 0/526 (0%) Strand=Plus/Plus Query 18294 TTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATA 18353 || || || ||||||||||||| |||||| || || ||||| |||||| | ||||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 18354 CCATCAGAGAAACTCCCTTGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCT 18413 |||||||||||| ||||| || | || || | || ||||| | || || || Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 18414 ACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCC 18473 |||||||| || |||||||| |||||| || |||||||||| | || | |||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402 Query 18474 CATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATAT 18533 || | || |||||||||| ||| || | || || || | || || ||||| || Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462 Query 18534 GGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGA 18593 || || ||||| |||||||| ||||| || | || |||||||| || |||||||| || Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522 Query 18594 AGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGT 18653 | ||||||||||||||| | || | || || || || |||||||||||||| || | Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582 Query 18654 AAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAAT 18713 | | || || || |||||||| |||||||| || ||||| ||||| || || | ||| Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642 Query 18714 GCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCAC 18773 || || | ||| ||| || ||| ||||| | | ||| ||||| | ||| |||||||| Sbjct 32643 GCGATGATAAACACTGAAGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCAA 32702 Query 18774 CCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 || | ||| | ||||| | || || |||||||| ||||| |||| Sbjct 32703 CCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAAAC 32748 Score = 291 bits (322), Expect = 2e-74 Identities = 341/461 (74%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894 |||||||||| ||||||||| ||||| |||||||| ||||| ||||| | |||||||| Sbjct 30840 GCTAAATCTAACGGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATACCAAGGTTG 30899 Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGAT 17954 || | ||||| | ||||||||| || | || | ||| | |||||| ||| Sbjct 30900 GCACGGTTGATAATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCTACAACTGAT 30959 Query 17955 TGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 18014 |||||||||||||| ||||| | || ||||||||||| || || || | || |||| | Sbjct 30960 TGGTTGAAGTTGAAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTAAAC 31019 Query 18015 CATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAG 18074 || || | | || ||||||||||| ||||||||||||| | |||||||| Sbjct 31020 CAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAGTTGTTAAAA 31079 Query 18075 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTC 18134 ||| || ||||| || | | || |||||||||||||| ||||| || || || || Sbjct 31080 GAAGCGTATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTT 31139 Query 18135 TCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTA 18194 ||||||||||| || ||||| || || | ||| || || |||||| ||||| | | Sbjct 31140 TCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTTGTTTCACGA 31199 Query 18195 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 18254 || || || ||||| ||||| ||||||||||||| |||||| | ||||| ||||| Sbjct 31200 ATTAGAGAAGAAGTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACA 31259 Query 18255 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATT 18295 || ||||| || ||||||||||| || ||||| || || || Sbjct 31260 CCGGCAACGCCTAGCATATGGAATGGGTGCATTAGAATGTT 31300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151311931138400