Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq2029 576 2e-159 >seq2029 Length=64692 Score = 576 bits (638), Expect = 2e-159 Identities = 736/1014 (73%), Gaps = 0/1014 (0%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| || ||||| ||||| ||||||| |||||||| || ||||| Sbjct 62366 AGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCTGATCT 62425 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || ||||| || || || ||||| || Sbjct 62426 TGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGGATATTTTTGGTATAGAAAGTT 62485 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || |||||||||||||| || | || ||||| || || || || |||||||| | | Sbjct 62486 TCAAATTCTGGATCTTCTGCAGCGCGAATTTCTTGTGAAACGAAATCGTAAGCACGTAAG 62545 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| ||||| | | ||| || | ||| |||| || || | ||||||||||| Sbjct 62546 TTTAAAGCTAGACCTACTACACCAATAGCACTCATCCAAAGCCCTGTTACAGGAACAAAA 62605 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 ||||||||||| || ||||| | |||||| ||| || | |||||||||||||||||| Sbjct 62606 AGCATAAAGAAGTGTAACCAACGTTTATTAGAAAAAGCTACACCAAAGATTTGAGACCAA 62665 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || | ||| || || ||||| || || || ||||| |||| || | | || || | Sbjct 62666 AATCTGTTAGCAGTTACCATAGAGTATGTTTCTTCTGCTTGAGTTGGGTTAAACGCACGG 62725 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || |||||||| ||||||||||||| | || ||||| || ||||| |||| || || Sbjct 62726 AATGTGTTTGCACCATCACCATCTTCAAAAAGTGTGTTTTCTACAGTAGCACCATGAATG 62785 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | || | || |||| || | ||| || ||||||||||||||||| ||||| | Sbjct 62786 GCGCAAAGTAACGCAGCTCCTAGTACACCAGCTACACCCATCATATGGAAAGGGTTTAAA 62845 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||||||||||||||| || | || | | || | || || || ||||||||||| Sbjct 62846 GTCCAGTTATGGAAGCCTTGAAAAAATAAGATAAAACGGAAAATTGCCGCAACACCAAAA 62905 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || ||||||||||||| || || || | || || || || |||||| || ||| Sbjct 62906 CTTGGTGCAAAGAACCAACCTGATTGACCTAATGGGTAAATTAGGAACACAGAAACGAAA 62965 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 |||| || || |||| || ||||| || || || ||||||||| | | | | ||| Sbjct 62966 ACAGAAATTGGAGCAGAAAAAGCAATCGCGTTATATGGACGAATTTTTACTGAACGAGCA 63025 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||||||||| |||||||| || | ||| | |||||| || || || ||| Sbjct 63026 ATTTCAAATTGACGAAGCATAAAACCAATCAGTGAAAAAGAACCGTGAAGGGCTACGAAA 63085 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || ||||||||| ||| | ||||| ||||||||||| || |||||| Sbjct 63086 GTCCAAAGACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCTGGGCCCCAA 63145 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 || | | | ||||||||||||| | || || || || || ||||| || | |||| Sbjct 63146 AGAAATAATAAAGAATGACCCATACTATTTGCTGGAGTAGAAACCGCAGCAGTTAAGAAA 63205 Query 102550 TTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTC 102609 ||| ||||| | || || || | || || |||||||| ||||| |||| || Sbjct 63206 TTACAGCCTTCTAAATATGAAGTAGCTAAACCATGAGTATACCAAGAAGTTACAAATGTA 63265 Query 102610 GTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGAC 102669 || || |||| ||| || |||| ||| ||||| ||||| || || | ||||| || ||| Sbjct 63266 GTTCCTGTAAACCAACCACCAAGTGCAAGATATGCAGTCGGGAATAAAAGTAACCCTGAC 63325 Query 102670 CAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAAC 102723 || || ||||| || || || || || || ||||||||| | | |||||| Sbjct 63326 CATCCTACAAAAACGAAACGGTCGCGACGAAGCCAGTCATCAACAACATCAAAC 63379 Score = 363 bits (402), Expect = 2e-95 Identities = 397/525 (76%), Gaps = 2/525 (0%) Strand=Plus/Plus Query 103634 TTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATA 103693 ||||| || |||||||| || | |||| |||| || || || |||||||| ||||||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 103694 GCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCA 103753 |||| ||||| ||||||||||| | ||||||| | |||||| || | || || ||| Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 103754 ACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCC 103813 || || || ||||| || || ||||| || ||||| || | |||| | || |||||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402 Query 103814 CACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAA 103873 |||||||| ||||| || | | |||| || | || ||| || | || | ||||||| || Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462 Query 103874 GGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGA 103933 ||||||||||| || | ||| || |||||||| |||||||||||||| || ||||| || Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522 Query 103934 AGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATG 103993 | ||| |||||||| || | |||| || |||||||| ||||||||||| ||||| | Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582 Query 103994 AGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAA 104053 |||||||||| || || ||||| || || |||||||| || ||||||||||| | ||| Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642 Query 104054 GCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCA 104112 || | ||| || | || ||||| | || | ||| || ||||| | ||||| ||||| Sbjct 32643 GCGATGATAAACACTGA-AGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCA 32701 Query 104113 ACCAACATAGAGACGGTTGTTTGTCGATGTAACCCACTCGCAGAA 104157 ||| | || | |||||| | || ||||||||||| || || Sbjct 32702 ACCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAA 32746 Score = 309 bits (342), Expect = 4e-79 Identities = 332/449 (74%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 103187 GGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGGTTGAGA 103246 ||||||||||||||||||||||| ||||| ||||||||||| || || ||||||| | Sbjct 30852 GGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATACCAAGGTTGGCACGGTTGATA 30911 Query 103247 ACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTGAAGTTG 103306 | ||| ||||| ||||| | ||||| || || ||| | | || |||||||||||| Sbjct 30912 ATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCTACAACTGATTGGTTGAAGTTG 30971 Query 103307 AATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATACCCACT 103366 || || || | |||||| ||||| || || ||| | || || ||||| ||||| || Sbjct 30972 AAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATACCAACA 31031 Query 103367 ACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCGTATTGG 103426 ||||| | |||||||| || || ||||||||| Sbjct 31032 ACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAGTTGTTAAAAGAAGCGTATTGG 31091 Query 103427 AAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGT 103486 || || |||||||||||||| |||||||| || ||||||||||| || ||||| ||||| Sbjct 31092 AAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTTTCTTCTTCTTGA 31151 Query 103487 CCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGCGAGGAC 103546 ||||| |||||||| | ||| ||||| | ||||| || ||||||| || || || Sbjct 31152 CCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTTGTTTCACGAATTAGAGAAGAA 31211 Query 103547 GTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCC 103606 || ||||| ||||||||||||||| ||| | ||||||||| || || || |||||||| Sbjct 31212 GTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACACCGGCAACGCCT 31271 Query 103607 AGCATGTGGAAGGGGTGCATGAGAATGTT 103635 ||||| ||||| |||||||| |||||||| Sbjct 31272 AGCATATGGAATGGGTGCATTAGAATGTT 31300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633485091888000