Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq2029 347 4e-91 >seq2029 Length=64692 Score = 347 bits (384), Expect = 4e-91 Identities = 347/450 (77%), Gaps = 0/450 (0%) Strand=Plus/Plus Query 21482 CGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTAAG 21541 |||||||||||| ||||| ||||||||||| || || | ||||||||||||||||| | Sbjct 30851 CGGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATACCAAGGTTGGCACGGTTGAT 30910 Query 21542 AATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAGTT 21601 |||||||||||| ||||| || || | || | | | ||| | |||||||| ||||| Sbjct 30911 AATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCTACAACTGATTGGTTGAAGTT 30970 Query 21602 GAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTAC 21661 ||||||||| |||||||||||||| || || | || | |||| |||||||||||| || Sbjct 30971 GAAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATACCAAC 31030 Query 21662 AACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTG 21721 ||| ||||| ||||| | |||||||| | ||| || || ||||| ||| ||||| Sbjct 31031 AACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAGTTGTTAAAAGAAGCGTATTG 31090 Query 21722 GAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTG 21781 ||| || | ||||| || ||||| ||||| ||||| || |||||||| ||||| ||||| Sbjct 31091 GAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTTTCTTCTTCTTG 31150 Query 21782 ACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGA 21841 ||| || |||||||| | ||| ||| | | ||||| || |||||||| || || || Sbjct 31151 ACCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTTGTTTCACGAATTAGAGAAGA 31210 Query 21842 CGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACC 21901 || || || |||||||||||||||||| || ||||||||||| ||||| || || Sbjct 31211 AGTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACACCGGCAACGCC 31270 Query 21902 CAGCATGTGAAAAGGATGCATAAGAATATT 21931 ||||| || || || ||||| ||||| || Sbjct 31271 TAGCATATGGAATGGGTGCATTAGAATGTT 31300 Score = 269 bits (298), Expect = 8e-68 Identities = 381/528 (72%), Gaps = 8/528 (2%) Strand=Plus/Plus Query 21930 TTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATA 21989 || |||||||| ||||| || | |||| |||| || || || || || || || |||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 21990 GCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCG 22049 ||||||| ||||| || || || | || || | | ||| ||||| || || || || Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 22050 ACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCG-ATAGCTAAGTTC 22108 || || || ||||| ||||| ||||| || | ||| |||| || | || ||| ||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAA-TTC 32401 Query 22109 CCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAA 22168 |||||| || |||||||||| | ||| || | || ||| || | ||| | |||||| | Sbjct 32402 CCACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTA 32461 Query 22169 TGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTG 22228 ||||| |||||||| | |||||| ||||| | ||| ||||||||||| |||||||| || Sbjct 32462 AGGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATG 32521 Query 22229 TAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAA 22288 || ||||| || ||| | |||| | || || || ||||||||||| || || || Sbjct 32522 TAAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAA 32581 Query 22289 CAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAA 22348 || || |||| || || || ||||| |||||||| |||||||| ||||| | | ||| Sbjct 32582 AAGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAA 32641 Query 22349 GGCGATAATAAA-AC--AAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAA 22405 ||||| ||||| || |||||| | | || | | | |||||||| | || || || Sbjct 32642 AGCGATGATAAACACTGAAGTTGCA--GTTAATAAAGTA-GGAATCATTAATACACCAAA 32698 Query 22406 CCATCCTACATAAAGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 ||| || | || | |||||| | ||| || ||||| |||||| Sbjct 32699 CCAACCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAA 32746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146201749608000