Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2029 439 3e-118 >seq2029 Length=64692 Score = 439 bits (486), Expect = 3e-118 Identities = 725/1047 (69%), Gaps = 27/1047 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || || |||||||||| || ||||| || || Sbjct 62362 TTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCTG 62421 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | ||| || || || |||||||| Sbjct 62422 ATCTTGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGGATATTTTTGGTATAGAA 62481 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||| || || ||||| |||||||| || | || ||||| || || || ||||| || | Sbjct 62482 AGTTTCAAATTCTGGATCTTCTGCAGCGCGAATTTCTTGTGAAACGAAATCGTAAGCACG 62541 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | ||| | ||||||||||| | ||| |||| |||| | || | |||||||| Sbjct 62542 TAAGTTTAAAGCTAGACCTACTACACCAATAGCACTCATCCAAAGCCCTGTTACAGGAAC 62601 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||||||||| | | ||| |||||||| || | |||||| || || || Sbjct 62602 AAAAAGCATAAAGAAGTGTAACCAACGTTTATTAGAAAAAGCTACACCAAAGATTTGAGA 62661 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| |||||||| || || | |||| || ||||||||| | || || || | || || Sbjct 62662 CCAAAATCTGTTAGCAGTTACCATAGAGTATGTTTCTTCTGCTTGAGTTGGGTTAAACGC 62721 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | ||| | || ||| || ||||| | | ||| Sbjct 62722 ACGGAATGT----GTTTGCA-----CCATCACCAT------------CTTCAAAAAGTGT 62760 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | || || |||||||||||||| || ||||| || | ||||||| || || || Sbjct 62761 GTTTTCTACAGTAGCACCATGAATGGCGCAAAGTAACGCAGCTCCTAGTACACCAGCTAC 62820 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 ||||||||| || || || || || || ||| ||||| ||||| | ||||||||| | Sbjct 62821 ACCCATCATATGGAAAGGGTTTAAAGTCCAGTTATGGAAGCCTTGAAAAAATAAGATAAA 62880 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||| || ||||| || ||||| || |||||| |||||||||| ||||||| ||| Sbjct 62881 ACGGAAAATTGCCGCAACACCAAAACTTGGTGCAAAGAACCAACCTGATTGACCTAATGG 62940 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 || || || || | | ||| || | || |||||| || || | ||||| || Sbjct 62941 GTAAATTAGGAACACAGAAACGAAAACAGAAATTGGAGCAGAAAAAGCAATCGCGTTATA 63000 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 || | ||| ||| | || || |||||||| | ||||| ||||| || ||| Sbjct 63001 TGGACGAATTTTTACTGAACGAGCAATTTCAAATTGACGAAGCATAAAACCAATCAGTGA 63060 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| || || | ||||| || |||| |||||||| ||||| |||||||| || Sbjct 63061 AAAAGAACCGTGAAGGGCTACGAAAGTCCAAAGACCTCCAAGTTGGCACCAACGAGTAAA 63120 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 ||||| ||||| || |||||||| || | | | ||||||||| | | || Sbjct 63121 ATCACCTTGAGCTTCTGGGCCCCAAAGAAATAATAAAGAATGACCCATACTATTTGCTGG 63180 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || || || || |||||||| || || || | |||||||| || | |||||| Sbjct 63181 AGTAGAAACCGCAGCAGTTAAGAAATTACAGCCTTCTAAATATGAAGTAGCTAAACCATG 63240 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 |||||||| || || || || ||||||||| ||||||||||| | || ||||| || Sbjct 63241 AGTATACCAAGAAGTTACAAATGTAGTTCCTGTAAACCAACCACCAAGTGCAAGATATGC 63300 Query 123826 ACAAGGCAGAAGTAAAAG---ACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAA 123882 || | | | |||||| || |||||||||| || || ||||| || | | Sbjct 63301 ---AGTCGGGAATAAAAGTAACCCTGACCATCCTACAAAAACGAAACGGTCGCGACGAAG 63357 Query 123883 CCAGTCGTCAAGAACATCAAACCAACC 123909 |||||| |||| |||||||||| |||| Sbjct 63358 CCAGTCATCAACAACATCAAACAAACC 63384 Score = 354 bits (392), Expect = 9e-93 Identities = 395/525 (75%), Gaps = 2/525 (0%) Strand=Plus/Plus Query 124508 TTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATA 124567 |||||||| |||||||| |||| ||| ||||| || ||||| || ||||| | |||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 124568 CCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGAT 124627 ||||||||||| ||||| ||||| | |||||| | | ||||||||| ||| |||| Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 124628 ACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCC 124687 ||||||||||| |||||||| ||||| |||||||| ||||| | | | |||| |||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402 Query 124688 CACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAA 124747 |||| | |||||||| | | || || | | ||| || ||| | | || ||| Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462 Query 124748 GGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGT 124807 |||||||| || || |||||||| |||| || ||||||||||| || |||||||| ||| Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522 Query 124808 AGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAG 124867 | ||||| ||||| || | |||| || |||||||| ||||||||||| || ||||| Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582 Query 124868 AAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAAT 124927 | ||||| | ||||| || | ||| || |||||||| |||||||||||||| ||||| Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642 Query 124928 GCAACGATGAAACA-TGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCA 124986 || | ||| ||||| || | ||| || | ||| |||||||||| ||||||||||| Sbjct 32643 GCGATGAT-AAACACTGAAGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCA 32701 Query 124987 ACCAACATAAATTCTGTTGTTTGTTGATGTTACCCACTCACAGAA 125031 ||| | || | | ||| | || || ||||||||||| || Sbjct 32702 ACCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAA 32746 Score = 300 bits (332), Expect = 2e-76 Identities = 343/461 (74%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 |||| |||| ||||||||||| || || | |||||||| ||||||||||| | ||| Sbjct 30840 GCTAAATCTAACGGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATACCAAGGTTG 30899 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| | || ||| |||| || | | || | | ||| ||||||||| Sbjct 30900 GCACGGTTGATAATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCTACAACTGAT 30959 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| |||||||||||||| |||||||| ||||| || | ||||| | || || ||| Sbjct 30960 TGGTTGAAGTTGAAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTAAAC 31019 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || ||||| || || | |||| |||||| || | | |||||||| || Sbjct 31020 CAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAGTTGTTAAAA 31079 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 ||||| || ||||| || | |||||| ||||| || || ||||| || |||||||| ||| Sbjct 31080 GAAGCGTATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTT 31139 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||||||||| ||||| || ||||| | ||| ||| || | ||| |||||||| | Sbjct 31140 TCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTTGTTTCACGA 31199 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 ||||||||||| || ||||| ||||| ||||| || |||||||| || || || || | Sbjct 31200 ATTAGAGAAGAAGTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACA 31259 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTT 124509 || || || ||| ||| ||||| || |||||||||||||| Sbjct 31260 CCGGCAACGCCTAGCATATGGAATGGGTGCATTAGAATGTT 31300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578972345072000