Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2029 527 8e-145 >seq2029 Length=64692 Score = 527 bits (584), Expect = 8e-145 Identities = 691/949 (73%), Gaps = 6/949 (1%) Strand=Plus/Plus Query 23459 CATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGA 23518 |||||| |||| | || | ||| || | |||||||| || ||||| || ||| | Sbjct 62434 CATCCAAGCACGAATACCTTCGTTTAAAAGGATATTTTTGGTATAGAAAGTTTCAAATTC 62493 Query 23519 ACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCACG-AAGATTAAGAG 23577 |||||| ||||| ||||| ||||| || ||||| |||||||| ||| |||| || Sbjct 62494 TGGATCTTCTGCAGCGCGAATTTCTTGTGAAACGAAATCGTAAGCACGTAAGTTTAA-AG 62552 Query 23578 CAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAA 23637 | || || | | ||||||| | | |||||| || | ||||||||||| | ||||| Sbjct 62553 CTAGACCTACTACACCAATAGCACTCATCCAAAGCCCTGTTACAGGAACAAAAAGCATAA 62612 Query 23638 AGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGAT 23697 ||||||| |||||||| ||||| ||| || || || |||||||| |||||||| | | Sbjct 62613 AGAAGTGTAACCAACGTTTATTAGAAAAAGCTACACCAAAGATTTGAGACCAAAATCTGT 62672 Query 23698 TTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGT 23757 | || || ||||| || || || || || | ||||| | | ||||| || |||| Sbjct 62673 TAGCAGTTACCATAGAGTATGTTTCTTCTGCTTGAGTTGGGTTAAACGCACGGAATGTGT 62732 Query 23758 TTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGA 23817 |||| || ||||||||| | ||||| || || |||||| | |||||||| || | | Sbjct 62733 TTGCACCATCACCATCTTCAAAAAGTGTGTTTTCTACAGTAGCACCATGAATGGCGCAAA 62792 Query 23818 GAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGT 23877 | | || |||| |||| |||||| || |||||||||||||| ||||| | ||||||| Sbjct 62793 GTAACGCAGCTCCTAGTACACCAGCTACACCCATCATATGGAAAGGGTTTAAAGTCCAGT 62852 Query 23878 TATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCG 23937 |||| ||||| || | || | | || | |||||| ||||||||||| ||||| || | Sbjct 62853 TATGGAAGCCTTGAAAAAATAAGATAAAACGGAAAATTGCCGCAACACCAAAACTTGGTG 62912 Query 23938 CAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAA 23997 ||||||||||| ||| || || || || || || ||||| ||||| ||||| |||| || Sbjct 62913 CAAAGAACCAACCTGATTGACCTAATGGGTAAATTAGGAACACAGAAACGAAAACAGAAA 62972 Query 23998 TAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGACGTGCCAGTTCAA 24057 | ||| |||||||||||||||| || || ||||| ||| | | ||| || | ||||| Sbjct 62973 TTGGAGCAGAAAAAGCAATCGCGTTATATGGACGAATTTTTACTGAACGAGCAATTTCAA 63032 Query 24058 ACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAA 24117 | ||||| | ||||||||| || |||| ||| | |||||| || || || || | ||||| Sbjct 63033 ATTGACGAAGCATAAAACCAATCAGTGAAAAAGAACCGTGAAGGGCTACGAAAGTCCAAA 63092 Query 24118 GCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAA 24177 | |||||||||||| ||| || ||| || ||||||| || || |||||||| | | Sbjct 63093 GACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCTGGGCCCCAAAGAAATA 63152 Query 24178 GAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG-TAAGAAAGTTAGCA 24236 | ||||||||||||| | || || || || || || || | ||||||| ||| Sbjct 63153 ATAAAGAATGACCCATACTATTTGCTGGAGTAGAAACCGCAGCAGTTAAGAAA-TTACAG 63211 Query 24237 CCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCA 24296 || || | ||| ||| |||| | ||||| || |||||| || ||||| | || || Sbjct 63212 CCTTCTAAATATGAAGTAGCTAAACCATGAGTATACCAAGAAGTTACAAATGTAGTTCCT 63271 Query 24297 GTAAGCCAACCGCCAATGGCAAGATAAGCAGT-GGGAAGAAGTAGGAGTCCAGACCAACC 24355 |||| |||||| |||| |||||||| ||||| ||||| || || | || ||||| || Sbjct 63272 GTAAACCAACCACCAAGTGCAAGATATGCAGTCGGGAATAA-AAGTAACCCTGACCATCC 63330 Query 24356 CACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAAC 24404 ||||| || || || || || || |||||| || | | |||||| Sbjct 63331 TACAAAAACGAAACGGTCGCGACGAAGCCAGTCATCAACAACATCAAAC 63379 Score = 405 bits (448), Expect = 7e-108 Identities = 407/526 (77%), Gaps = 2/526 (0%) Strand=Plus/Plus Query 27193 TTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATA 27252 || || || || |||||||| | |||| ||||||| |||||||| ||||| | ||||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 27253 GCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCG 27312 |||| ||||||||||||||||||| || |||| || |||||| || | || ||||| Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 27313 ACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCC 27372 ||||| || || || || || ||||||||||||||||||||||| | || | |||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402 Query 27373 CACTCACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAA 27432 |||||||| ||||| |||| | |||| || | | ||| || | || | |||||| || Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462 Query 27433 GGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGG 27492 ||||||||||| || ||||| || || || || ||||||||||| || |||||||| || Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522 Query 27493 AGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATA 27552 | ||||||||| || ||| | || | || |||||||||||||||||||| || || | | Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582 Query 27553 AGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAAT 27612 |||||||||| ||| || ||||| ||||| || ||||| || || ||||||||||| || Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642 Query 27613 GCGACAATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCA 27671 |||| || || | || |||||| | ||| | || || ||||| | |||||| ||||| Sbjct 32643 GCGATGATAAACACTGA-AGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCA 32701 Query 27672 ACCAACATACAAACGGTTGTTAGTTGATGTCACCCACTCACAGAAA 27717 ||| | || |||||||| | ||| || ||||||||||| ||| Sbjct 32702 ACCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAAA 32747 Score = 356 bits (394), Expect = 3e-93 Identities = 361/470 (77%), Gaps = 0/470 (0%) Strand=Plus/Plus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| || | || | ||| || || || || || ||||| | || || || || || | Sbjct 30831 TCAACAACCGCTAAATCTAACGGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATA 30890 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 ||||| |||||||||| || ||| ||||||||||| | ||||| || |||||||| Sbjct 30891 CCAAGGTTGGCACGGTTGATAATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCT 30950 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | || || || |||||||||||||| || | ||||||||||| || || | ||| | Sbjct 30951 ACAACTGATTGGTTGAAGTTGAAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAA 31010 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 || || ||||| || |||||||| ||||| ||||| | |||||| || || ||||| ||| Sbjct 31011 GCAGTAAACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAG 31070 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 ||||| || ||||| |||||||| || |||||||||||||||||||| ||||| |||||| Sbjct 31071 TTGTTAAAAGAAGCGTATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATG 31130 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 ||||| || ||||||||||||||||| || ||||| | ||| ||| || | ||||| Sbjct 31131 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTT 31190 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || ||||| | || ||||| || || || ||||||||||||||||| | || ||| Sbjct 31191 GTTTCACGAATTAGAGAAGAAGTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCA 31250 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATT 27194 || ||||| || ||||| || ||||| ||||| |||||||| || || || Sbjct 31251 CCAAATACACCGGCAACGCCTAGCATATGGAATGGGTGCATTAGAATGTT 31300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665464452752000