Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq538 123 3e-23 seq3285 91.5 2e-13 >seq538 Length=19016 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||| | |||||||| |||||||||| || |||||||| |||||||||||||| || ||| Sbjct 16712 TTCTCAGAGCGCCTGATTGCGTTTGCTTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTTC 16771 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||| | || | ||| | |||||||| || |||||||| ||||| ||| ||||| || Sbjct 16772 TGCTCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCCGGCCTCACCTTTTCAAACGAG 16831 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || ||||| || || || || || ||| || ||||| Sbjct 16832 CTCATTTCTCGTGACGAAGGCCTGCACACAGACTTTGC 16869 >seq3285 Length=63365 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/151 (74%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGC 65080 ||||||||||| | ||||| ||||| ||| | || | | ||| ||| || |||| Sbjct 18720 AGAAGAAGGCGCAGTGGGCGATGAAGTGGATAGAGAGCAGCA---GCTGCTTTGCAGAGC 18776 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 | ||| | || | |||||||||||||| ||| |||||| || || |||||| | || | Sbjct 18777 GGCTTGTCGCCTACGCGTGTGTGGAGGGCATCCACTTCTCTGGCTCTTTCTGCTCGATCT 18836 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGG 65171 ||| ||||||||||| |||||||| || Sbjct 18837 TCTGGCTGAAGAAGCGGCAGCTCATGCCTGG 18867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596542754368000