Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq2029 585 3e-162 seq112 107 2e-18 >seq2029 Length=64692 Score = 585 bits (648), Expect = 3e-162 Identities = 745/1020 (73%), Gaps = 4/1020 (0%) Strand=Plus/Minus Query 167013 GTTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGG 167072 ||||||||| | |||||||||||| | || ||||| |||||||| || ||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 167073 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 167132 | ||| | || || ||||| |||||||| |||| |||||| |||| || ||||| || Sbjct 63319 GTTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACATT 63260 Query 167133 CGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAACTTTCT 167192 || || ||||||||||||||| | || | ||| | || || || ||||| Sbjct 63259 TGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA-TTTCT 63201 Query 167193 TA-CTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGG 167251 || |||| || ||| |||||||||| || |||||||||||||||| | |||| |||| Sbjct 63200 TAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGGG 63141 Query 167252 GTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTG 167311 | || ||| ||||||| ||||| | ||| ||||||||| || || ||| |||| | Sbjct 63140 GCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTCG 63081 Query 167312 TGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTC 167371 | || || ||||| | ||| | || |||||||| |||||||| || |||||| |||||| Sbjct 63080 TAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCTC 63021 Query 167372 GCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 167431 | | || ||||| || || || |||||||| |||| ||| ||| |||| |||| Sbjct 63020 GTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTTCG 62961 Query 167432 TTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCG 167491 || || ||||| | || || | |||||| | ||||||||||| || || | Sbjct 62960 TTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTTTG 62901 Query 167492 GAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGA 167551 | || || || || ||||| || || | || | ||||| ||||| |||||||| | | Sbjct 62900 GTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTTAA 62841 Query 167552 ATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCC 167611 | || || ||||||||||||||||| ||| | || || | ||| || |||| || || | Sbjct 62840 ACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCATTC 62781 Query 167612 ATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGG 167671 |||||| ||| ||||| || || | | |||||||||||| |||||||| || | Sbjct 62780 ATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTG 62721 Query 167672 CATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGT 167731 | || | | ||||| | |||||| || || || ||||| || || ||| |||| |||| Sbjct 62720 CGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTGGT 62661 Query 167732 CTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCG 167791 |||| ||||| || | ||||| || ||||| ||| | || ||||||||| | || | Sbjct 62660 CTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTTTG 62601 Query 167792 TTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTT- 167850 |||| || | || ||||||| | ||||| | | ||||| ||| |||| ||| Sbjct 62600 TTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCT-TTAAACTTA 62542 Query 167851 CGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACT 167910 |||||||||||||||||||| ||||| || | || || || |||||||| ||||||||| Sbjct 62541 CGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAACT 62482 Query 167911 TTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGAT 167970 |||||||| ||||| |||||| | || |||||| |||| || ||| | || || ||| Sbjct 62481 TTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGAT 62422 Query 167971 CAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 || |||||||| || |||| ||||| ||||| ||| | ||||| || ||||| || ||| Sbjct 62421 CAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAA 62362 Score = 399 bits (442), Expect = 2e-106 Identities = 405/525 (77%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 165769 TTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTG 165828 || || || |||||||| ||||| | |||||| | || |||||||||||||| | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 165829 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 165887 |||||||| ||| | || | |||||| || | || ||| |||| || ||||| || || Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCACC 32628 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 ||||| || ||||| || |||||||| || || ||||||| || | || || ||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 |||||| |||||||| || |||| |||| |||||||| ||| |||| ||||| || || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 |||||||| || || |||||||||||| | || ||||||||||||| |||||| | || Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | || ||| | | || |||| | | ||||||||||||||||||||| | |||| ||| Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187 | ||||||||||||||||||| |||||||||||||||||||| ||||| || | || Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328 Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247 |||||| | | || || ||||||||||| ||||||||||| ||||| | || || Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268 Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAA 166292 || || ||||| |||| |||| | || |||||||||||||| || Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 360 bits (398), Expect = 2e-94 Identities = 349/449 (78%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 166291 AATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTG 166350 || ||||| ||||| || ||||||||||| |||||||| || ||||||||||| || Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 166351 TTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACC 166410 || |||||||||||| | || ||||||||||| || | || || ||||| | | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 166411 GAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCC 166470 ||||| ||| | |||||||| ||||| |||||||||||||| ||||||||||| || Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 166471 GCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCC 166530 |||||||| |||||||||||||| || |||||||||||||| || |||||||| || || Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 166531 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTC 166590 || || |||||| | ||||| ||||| ||||| || || ||||| || || | || | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 166591 TCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 166650 || || ||||| |||||| | || ||||||||||||||||| || | | ||| || Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 166651 GGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTT 166710 || ||||| | ||||| ||||| || || | ||||| || || ||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 166711 ATGCATGAGCGTAACGCACACAACTTCCC 166739 ||||||||||||||||| ||||||||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852 >seq112 Length=44222 Score = 107 bits (118), Expect = 2e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| || Sbjct 35610 TCCTCAGTAGCTCAGTGGTAGAGCGGTCGACTGTTAATCGATTGGTCGTAGGTTCAAGTC 35669 Query 18189 CTACCTGGGGAG 18200 |||||||||||| Sbjct 35670 CTACCTGGGGAG 35681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561222743840000