Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq161 141 1e-28
seq3244 96.9 5e-15
seq3190 96.9 5e-15
seq3143 89.7 7e-13
>seq161
Length=11266
Score = 141 bits (156), Expect = 1e-28
Identities = 189/263 (72%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391
|| |||||| | ||||| ||||||| || || || || || || || || || |||||
Sbjct 2951 TGCGTTGGTCTGTGGCAGCATGATCGCGTGGAAATCATTCCAAACGAGCAGGGCAACCGC 3010
Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451
|| ||||| || ||||| || || || || | || || || |||| |||||||| ||
Sbjct 3011 ACCACTCCCTCATACGTGGCATTCACCGACACCGAGCGCCTAATTGGCGATGCCGCCAAG 3070
Query 195452 AATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGC 195511
|| ||| ||| |||||||| ||||| ||||| ||||| || ||||| || || ||||||
Sbjct 3071 AACCAGGTAGCGATGAACCCCATCAACACTGTTTTTGATGCAAAGCGGCTCATCGGTCGC 3130
Query 195512 AAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCC 195571
||||| || || || || ||| |||| || | ||||| | | | || || |
Sbjct 3131 AAGTTCTCAGACCCGACCGTTCAACACGACATCAGCCACTGGCCCTTCAAGGTGGTGTCT 3190
Query 195572 GGTGTGGCTGATAAGCCTATGAT 195594
|| || ||| |||||||||||
Sbjct 3191 GGCCCGGGTGACAAGCCTATGAT 3213
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 196736 GGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATT 196795
|| || ||||||||| | ||||||||||| | | ||||| | ||||| ||
Sbjct 5418 GGCATCCTAAACGTCTCTGCTGAGGACAAAACCACCGGCAACAAGAACAAGATCACAATC 5477
Query 196796 ACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAA 196855
|||||||||||||| || | || ||||| || ||||| || ||||| || || |||||
Sbjct 5478 ACCAATGACAAGGGCCGCTTGTCCAAGGACGAGATTGAGCGCATGGTGCAGGAGGCGGAG 5537
Query 196856 AAGTACAGGGAAGAAGACGAG 196876
||||||| | ||||| |||
Sbjct 5538 AAGTACAAGTCGGAAGATGAG 5558
>seq3244
Length=4747
Score = 96.9 bits (106), Expect = 5e-15
Identities = 110/147 (75%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 171949 ATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAG 172008
||||| || || |||||||| || ||||||||||| || || || ||||| || || |||
Sbjct 3100 ATTCAGGACAAAGAAGGCATCCCCCCCGATCAGCAGCGTCTCATCTTTGCGGGCAAGCAG 3159
Query 172009 CTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTT 172068
|| || ||||| || || || || || |||||| | || |||||||| || | |||||
Sbjct 3160 CTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACCTG 3219
Query 172069 GTTCTAAGGCTTCGGGGTGG--TGCAA 172093
|| || | || || || || |||||
Sbjct 3220 GTGCTGCGCCTGCGAGGAGGCATGCAA 3246
Score = 86.0 bits (94), Expect = 8e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 171952 CAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTT 172011
|| || || || ||||| || ||||||||||| || || || ||||| || || |||||
Sbjct 3555 CAGGACAAAGAGGGCATCCCCCCCGATCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTG 3614
Query 172012 GAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTT 172071
|| ||||| || || || || || |||||| | || |||||||| || | ||||| ||
Sbjct 3615 GAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACCTGGTG 3674
Query 172072 CT 172073
||
Sbjct 3675 CT 3676
>seq3190
Length=33988
Score = 96.9 bits (106), Expect = 5e-15
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022
|||||| || || || ||||| || || || ||||| || || |||||||| ||||| ||
Sbjct 16927 AGGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAGGATGGCCG 16986
Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082
|| || |||||||||||| | || |||||||| || || ||||| || || | || ||
Sbjct 16987 CACGCTGGCTGATTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCG 17046
Query 172083 GGGTGG 172088
|||||
Sbjct 17047 AGGTGG 17052
>seq3143
Length=13185
Score = 89.7 bits (98), Expect = 7e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || || ||||| ||||| || || || || |||||||| ||||| ||||| ||
Sbjct 6787 ATGCAGATTTTCGTGAAGACCCTCACGGGCAAGACGATCACCCTGGAGGTGGAGTCTTCG 6846
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965
||||| ||||| || | || ||||||||||| || ||||| ||
Sbjct 6847 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 6890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657832796192000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |