Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq161 141 1e-28 seq3244 96.9 5e-15 seq3190 96.9 5e-15 seq3143 89.7 7e-13 >seq161 Length=11266 Score = 141 bits (156), Expect = 1e-28 Identities = 189/263 (72%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 || |||||| | ||||| ||||||| || || || || || || || || || ||||| Sbjct 2951 TGCGTTGGTCTGTGGCAGCATGATCGCGTGGAAATCATTCCAAACGAGCAGGGCAACCGC 3010 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || ||||| || ||||| || || || || | || || || |||| |||||||| || Sbjct 3011 ACCACTCCCTCATACGTGGCATTCACCGACACCGAGCGCCTAATTGGCGATGCCGCCAAG 3070 Query 195452 AATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGC 195511 || ||| ||| |||||||| ||||| ||||| ||||| || ||||| || || |||||| Sbjct 3071 AACCAGGTAGCGATGAACCCCATCAACACTGTTTTTGATGCAAAGCGGCTCATCGGTCGC 3130 Query 195512 AAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCC 195571 ||||| || || || || ||| |||| || | ||||| | | | || || | Sbjct 3131 AAGTTCTCAGACCCGACCGTTCAACACGACATCAGCCACTGGCCCTTCAAGGTGGTGTCT 3190 Query 195572 GGTGTGGCTGATAAGCCTATGAT 195594 || || ||| ||||||||||| Sbjct 3191 GGCCCGGGTGACAAGCCTATGAT 3213 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 196736 GGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATT 196795 || || ||||||||| | ||||||||||| | | ||||| | ||||| || Sbjct 5418 GGCATCCTAAACGTCTCTGCTGAGGACAAAACCACCGGCAACAAGAACAAGATCACAATC 5477 Query 196796 ACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAA 196855 |||||||||||||| || | || ||||| || ||||| || ||||| || || ||||| Sbjct 5478 ACCAATGACAAGGGCCGCTTGTCCAAGGACGAGATTGAGCGCATGGTGCAGGAGGCGGAG 5537 Query 196856 AAGTACAGGGAAGAAGACGAG 196876 ||||||| | ||||| ||| Sbjct 5538 AAGTACAAGTCGGAAGATGAG 5558 >seq3244 Length=4747 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 171949 ATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAG 172008 ||||| || || |||||||| || ||||||||||| || || || ||||| || || ||| Sbjct 3100 ATTCAGGACAAAGAAGGCATCCCCCCCGATCAGCAGCGTCTCATCTTTGCGGGCAAGCAG 3159 Query 172009 CTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTT 172068 || || ||||| || || || || || |||||| | || |||||||| || | ||||| Sbjct 3160 CTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACCTG 3219 Query 172069 GTTCTAAGGCTTCGGGGTGG--TGCAA 172093 || || | || || || || ||||| Sbjct 3220 GTGCTGCGCCTGCGAGGAGGCATGCAA 3246 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 171952 CAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTT 172011 || || || || ||||| || ||||||||||| || || || ||||| || || ||||| Sbjct 3555 CAGGACAAAGAGGGCATCCCCCCCGATCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTG 3614 Query 172012 GAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTT 172071 || ||||| || || || || || |||||| | || |||||||| || | ||||| || Sbjct 3615 GAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACCTGGTG 3674 Query 172072 CT 172073 || Sbjct 3675 CT 3676 >seq3190 Length=33988 Score = 96.9 bits (106), Expect = 5e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 |||||| || || || ||||| || || || ||||| || || |||||||| ||||| || Sbjct 16927 AGGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAGGATGGCCG 16986 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 || || |||||||||||| | || |||||||| || || ||||| || || | || || Sbjct 16987 CACGCTGGCTGATTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCG 17046 Query 172083 GGGTGG 172088 ||||| Sbjct 17047 AGGTGG 17052 >seq3143 Length=13185 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| ||||| || || || || |||||||| ||||| ||||| || Sbjct 6787 ATGCAGATTTTCGTGAAGACCCTCACGGGCAAGACGATCACCCTGGAGGTGGAGTCTTCG 6846 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || | || ||||||||||| || ||||| || Sbjct 6847 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 6890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657832796192000