Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq2029 347 4e-91 >seq2029 Length=64692 Score = 347 bits (384), Expect = 4e-91 Identities = 347/450 (77%), Gaps = 0/450 (0%) Strand=Plus/Minus Query 41756 AATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTG 41815 || ||||| ||||| || || || ||||| || || ||||| ||||||||||| || Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 41816 TTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAG 41875 |||||||||||||||||| || || || || || || |||||||| || ||||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 41876 GTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCT 41935 | ||| ||| | |||||||| || |||||||| ||||| |||||||| || ||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 41936 GCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGT 41995 ||||| ||||| || ||||| | || |||||||| ||| ||||| || || ||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 41996 CTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTG 42055 | |||||||| | ||||| ||||| ||||| |||||||||||| |||| | || | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 42056 TCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGAT 42115 || || |||||||||||||| |||||||||||||| |||||||| | ||| | | | Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 42116 GGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTG 42175 || | || || ||||| |||||||||||| | ||||||||||||||||| | || || Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 42176 ATGCATGAGCGGAACGCACACAACTTCCCG 42205 ||||||||||| ||||| |||||||||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCCG 30851 Score = 269 bits (298), Expect = 8e-68 Identities = 381/528 (72%), Gaps = 8/528 (2%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 |||||| ||||| || ||| | |||||| | || | || ||||| || || | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 41294 ATGATTCCGTGCCTCCTTGCCGCTACAACTT--GT-TTTATTATCGCCTTTGTTGGCGCA 41350 |||||||| | | | || | | |||||| || ||||| ||||| ||| | | ||| Sbjct 32686 ATGATTCC-TACTTTATTAAC--TGCAACTTCAGTGTTTATCATCGCTTTTATCGCAGCA 32630 Query 41351 CCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAAC 41410 || |||||||| |||||||| ||||| || || || |||| || || || || || ||| Sbjct 32629 CCTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAAC 32570 Query 41411 AACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCA 41470 |||||||| || || || | |||| | ||| || ||||| |||| |||||||| Sbjct 32569 AACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCT 32510 Query 41471 ATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACC 41530 ||||||||||| ||| | ||||| |||||| | |||||||| ||||| | |||||| | | Sbjct 32509 ATTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATC 32450 Query 41531 GTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTAT 41590 || | || ||| || | || ||| | |||||||||| || ||||||||| ||| || | Sbjct 32449 GTTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAA-TTATCTTT 32391 Query 41591 -CGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGAC 41649 || |||| ||| | || ||||| ||||| ||||| || || || || || || || Sbjct 32390 CCGTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAAC 32331 Query 41650 TGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGG 41709 ||||| ||| | | || || | || || || ||||| ||||||| |||||| || || Sbjct 32330 AGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGG 32271 Query 41710 GATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAA 41757 || || || || || |||| |||| | || ||||| |||||||| || Sbjct 32270 TATTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146208149334400