Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq2029 336 6e-88 >seq2029 Length=64692 Score = 336 bits (372), Expect = 6e-88 Identities = 353/460 (77%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 42811 AACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTG 42870 |||||||| ||||| || ||||||||||| || |||||||| ||||||||||| || || Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 42871 TTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAAC 42930 ||||| |||||||| ||| ||||| || |||||||| | |||||||| ||||| ||| Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 42931 GAA--AGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTG 42988 ||| ||| || | || ||||| ||||||||||| || || ||||| ||||| |||| Sbjct 31180 GAATCAGCTAACG--AAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTG 31123 Query 42989 CAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCT 43048 |||| ||||| ||||| || || | || |||||||| || || ||||| || ||| | Sbjct 31122 CAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTT 31063 Query 43049 CTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCG 43108 | || || ||||| | || |||||||| ||||| || |||||||| ||| || | || Sbjct 31062 CATTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTA 31003 Query 43109 TCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATC 43168 | |||||||| || ||||| |||||||| ||||| ||||||||| |||| ||| || Sbjct 31002 TTTCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGAT--TC 30945 Query 43169 AGAA--TCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGA 43226 | || | ||| || ||||||||||| ||| | || |||||||||||||| | || Sbjct 30944 ACAAGGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGA 30885 Query 43227 GGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGAT 43266 || ||||| ||||| || || || ||||||||| | ||| Sbjct 30884 AGTAATGCATGAGCGTAACGCTCACAACTTCCCGTTAGAT 30845 Score = 298 bits (330), Expect = 2e-76 Identities = 386/533 (72%), Gaps = 0/533 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||||| ||| ||| | |||||| | || | || |||||| Sbjct 32755 TGGGCTCGTTTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTT 32696 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTTATTGTCGCTTTCATT 42399 ||||| | |||||||| | | | |||| || | ||||| ||||||| || Sbjct 32695 GGTGTATTAATGATTCCTACTTTATTAACTGCAACTTCAGTGTTTATCATCGCTTTTATC 32636 Query 42400 GCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTAT 42459 || || ||||| || || || ||||| || ||||| || || ||||| || ||| | || Sbjct 32635 GCAGCACCTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATAC 32576 Query 42460 GGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTG 42519 || ||||||||||| |||||||| | | |||| ||||||||| || ||||||| Sbjct 32575 GGAAACAACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTC 32516 Query 42520 TATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAG 42579 || | || |||||||| | | |||||||||||| | ||||| || || ||||| || Sbjct 32515 TACCCTATTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAA 32456 Query 42580 CTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTT 42639 || |||| | || ||| | | || |||| |||||| |||| || || |||||| | Sbjct 32455 CTTATCGTTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTA 32396 Query 42640 TCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCA 42699 || | ||| | || ||| | || ||||| ||||||||||| || || || |||||| Sbjct 32395 TCTTTCCGTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCA 32336 Query 42700 GCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCT 42759 || || || || ||| | |||| ||| | || ||||||||||| || ||||| |||||| Sbjct 32335 GCAACAGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCT 32276 Query 42760 CTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAA 42812 | || ||||| ||||| || ||||||||| | || ||||| ||||| ||||| Sbjct 32275 TTAGGTATTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143526663972800