Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq2029 279 2e-70 >seq2029 Length=64692 Score = 279 bits (308), Expect = 2e-70 Identities = 376/524 (72%), Gaps = 0/524 (0%) Strand=Plus/Plus Query 26336 TTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATT 26395 ||||| || ||||||||||||| ||| |||||||| |||||||| ||||| | |||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 26396 CCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGAT 26455 |||||| ||| ||||| |||| || || | | ||| || || ||||| | Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 26456 AGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCC 26515 | |||||||| || ||||| |||||||| | ||| |||| | | |||||| |||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402 Query 26516 CACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATAT 26575 |||| | || || | | ||||| ||||| || | | || ||||| || Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462 Query 26576 GGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGT 26635 || || || ||||||| ||| ||||| || | | |||||||| || ||||| |||||| Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522 Query 26636 AGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATT 26695 | |||||||||||||| | || | | || || || || || ||||||||||| | Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582 Query 26696 AACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAG 26755 | || || |||||||||||||| || ||||| ||||| ||||| ||||||||||| || Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642 Query 26756 GCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCAT 26815 || | ||||| || ||| || | | ||| || ||||| | || || ||||| Sbjct 32643 GCGATGATAAACACTGAAGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCAA 32702 Query 26816 CCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 || | || | |||||| ||||| || ||||||||||||||||| Sbjct 32703 CCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAA 32746 Score = 226 bits (250), Expect = 8e-55 Identities = 329/462 (71%), Gaps = 2/462 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 ||||| || | || ||||| ||||| |||||||| ||||| ||||| | || ||||| Sbjct 30840 GCTAAATCTAACGGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATACCAAGGTTG 30899 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACA-TCTACTACTGA 25995 || ||||| | | |||||||| || | || || | | || | ||||| ||||| Sbjct 30900 GCACGGTTGATAATGTCAGCCCAAGT-GTTAATAACACGGCCTTGTGAATCTACAACTGA 30958 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| ||||| |||||||||| ||| || ||||| || | ||||| | || || | Sbjct 30959 TTGGTTGAAGTTGAAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTAAA 31018 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || |||||||| ||||||| ||| | |||||||| | ||||| ||| ||||| Sbjct 31019 CCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAGTTGTTAAA 31078 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 | || || || |||||||| | || ||||| || || || || || || || || || Sbjct 31079 AGAAGCGTATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGT 31138 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| ||||| || || || || || | || ||| | | ||| || ||||| Sbjct 31139 TTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTTGTTTCACG 31198 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 ||| || || ||||| || | ||||||||||||| ||| | | ||||| || || Sbjct 31199 AATTAGAGAAGAAGTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCACCAAATAC 31258 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATT 26337 || ||||| || |||||||||||||||||| || || || Sbjct 31259 ACCGGCAACGCCTAGCATATGGAATGGGTGCATTAGAATGTT 31300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147705685312000