Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq2029 351 1e-91 >seq2029 Length=64692 Score = 351 bits (388), Expect = 1e-91 Identities = 388/517 (75%), Gaps = 0/517 (0%) Strand=Plus/Minus Query 154976 AGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCC 155035 ||||||| ||| |||| ||||| | || |||||||||| ||||| | ||||| | Sbjct 32739 AGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTAATGATTC 32680 Query 155036 CTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAG 155095 || | | |||| || || || || |||| || || || ||||||||||| | Sbjct 32679 CTACTTTATTAACTGCAACTTCAGTGTTTATCATCGCTTTTATCGCAGCACCTCCTGTTG 32620 Query 155096 ACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCT 155155 | || |||||||| ||||| || || ||||||| | | || || ||||||||||| | Sbjct 32619 ATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAACATCATTT 32560 Query 155156 CTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAG 155215 |||||||| || | |||| ||| |||||||| ||| | || ||||| ||||||||||||| Sbjct 32559 CTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTATTTGGGAAG 32500 Query 155216 CAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACT 155275 |||| ||||||| || ||||| ||||| |||||||||| ||||||| | || | || | Sbjct 32499 CAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCATT 32440 Query 155276 TCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCA 155335 || | | |||||| | ||| |||||| |||||||| | |||| |||| | || | Sbjct 32439 TCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGTTTAGGTA 32380 Query 155336 TGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCC 155395 ||||||| ||||| ||||| ||||| |||||||| |||| || ||||||||| Sbjct 32379 TGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGCTGTATTCA 32320 Query 155396 TTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTA 155455 | | || || |||||||||||||||||||||||| |||||| | ||||| ||||||| Sbjct 32319 TCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTA 32260 Query 155456 CTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAA 155492 | ||||||| ||| |||| |||||||| || || || Sbjct 32259 CATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 345 bits (382), Expect = 5e-90 Identities = 346/449 (77%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 155491 AATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTT 155550 || || || |||||||| ||||| ||||| || || || ||||| || ||||| || | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 155551 TTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAA 155610 ||||||||||||||||||||| | || || ||||| ||||| |||||||| |||||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 155611 GAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCT 155670 || || ||| | |||||||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 155671 GCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGT 155730 |||||||| |||||||||||| | || ||||| || || || || |||||||| | Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 155731 CTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTG 155790 | || |||||| | ||||| ||||| || || | || ||| |||||| | ||| | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 155791 TCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT 155850 ||||| ||||| |||||| | || ||||||||||||||||| || || ||||| | Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 155851 GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTA 155910 || || || || ||||| |||||| | ||||| || ||||||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 155911 ATGCACGAGCGTAACGCTCACAACTTCCC 155939 ||||| ||||||||||||||||||||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584808882416000