Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq2029 372 9e-99 >seq2029 Length=64692 Score = 372 bits (412), Expect = 9e-99 Identities = 399/525 (76%), Gaps = 2/525 (0%) Strand=Plus/Plus Query 40992 TTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATA 41051 || || || |||||||| || | ||||||||| ||||| ||| || |||||||||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 41052 CCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGAC 41111 ||||||||||||||||| ||||||| ||| || | | |||||||||| ||||| | Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 41112 AATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCC 41171 | ||| |||| ||| || || |||||||| | |||||||| | | | || | |||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402 Query 41172 CACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATAT 41231 |||| | ||| ||| | | ||||| || || ||| | || || ||||| || Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462 Query 41232 GGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGT 41291 || || |||||||||| ||| ||||| || | | |||||||| || |||||||||||| Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522 Query 41292 AGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATT 41351 | |||||||||||||| | |||| | ||| ||||| || || ||||| ||||| | Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582 Query 41352 AACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAG 41411 | || || ||||| |||||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642 Query 41412 GCGATTATGAAACA-TGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCA 41470 ||||| || ||||| || || ||||||| ||| | |||||||||| ||||||||||| Sbjct 32643 GCGATGAT-AAACACTGAAGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCA 32701 Query 41471 ACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||| | ||||| ||||| || |||||||| ||||| | |||||| Sbjct 32702 ACCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAA 32746 Score = 304 bits (336), Expect = 4e-78 Identities = 344/461 (75%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 40533 GCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTC 40592 ||||| |||| || |||||||||||||||||||| ||||||||||||||||| || | Sbjct 30840 GCTAAATCTAACGGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATACCAAGGTTG 30899 Query 40593 TGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGAC 40652 | ||| | || ||||||||||| ||| || || | | ||||| ||||| Sbjct 30900 GCACGGTTGATAATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCTACAACTGAT 30959 Query 40653 TGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGC 40712 ||||| ||||| |||||||| | ||| ||||||||||| || ||||| | | |||| | Sbjct 30960 TGGTTGAAGTTGAAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTAAAC 31019 Query 40713 CATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAAT 40772 || || |||| ||| || ||||| | | ||||| |||| | ||| ||||| || Sbjct 31020 CAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAGTTGTTAAAA 31079 Query 40773 GAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTC 40832 ||||| ||||| || |||| | ||| ||||| || || || || |||||||| ||||| Sbjct 31080 GAAGCGTATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTT 31139 Query 40833 TCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGA 40892 || |||| ||||| || || || || | ||| |||||| | || || || || ||| Sbjct 31140 TCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTTGTTTCACGA 31199 Query 40893 ATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACG 40952 || | || ||||| ||||| ||||||||||||| || || | ||||||||| || Sbjct 31200 ATTAGAGAAGAAGTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACA 31259 Query 40953 CCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTT 40993 || |||||||| |||||||||||||||||||| |||||||| Sbjct 31260 CCGGCAACGCCTAGCATATGGAATGGGTGCATTAGAATGTT 31300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143696256722400