Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq2029 376 3e-99 >seq2029 Length=64692 Score = 376 bits (416), Expect = 3e-99 Identities = 375/485 (77%), Gaps = 6/485 (1%) Strand=Plus/Plus Query 67821 TTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATT 67880 || ||||| |||||||| |||| |||| ||||||| |||||||||||||| | |||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 67881 GCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGAC 67940 | |||||||||||||||||||||| || |||| | ||| ||||| |||||||| Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 67941 ACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCC 68000 ||||| || ||||| || || ||||| ||||||||||| | |||| |||| | |||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402 Query 68001 CACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAA 68060 |||| |||||| ||| | |||||| | | ||| || | || | ||||||| || Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462 Query 68061 GGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGA 68120 || ||||| || || ||||| || || |||| ||||||||||| ||||| ||||| || Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522 Query 68121 AGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATG 68180 | |||||||||||| ||| |||||| || ||||||||||||||||||||| ||||| | Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582 Query 68181 AGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAAT 68240 || ||||| | ||| || || | |||||||||||||||||| ||||||||||| || || Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642 Query 68241 GCAATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAAC 68297 || ||||| || ||||||| | | | || ||||||||| || ||||| ||| Sbjct 32643 GCGATGATAAACACTGAAGTTGCAGTT---AATAAAGTAGGAATCATTAATACACCAAAC 32699 Query 68298 CAACC 68302 ||||| Sbjct 32700 CAACC 32704 Score = 363 bits (402), Expect = 2e-95 Identities = 350/449 (78%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 67374 GGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGG 67433 ||||||||||||||||||||||| ||||| |||||||| ||||| || | ||| | Sbjct 30852 GGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATACCAAGGTTGGCACGGTTGATA 30911 Query 67434 ATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGGATTGGTTGAAGTTG 67493 ||||| |||||||| ||| || || || || || || ||||||||||||||| Sbjct 30912 ATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCTACAACTGATTGGTTGAAGTTG 30971 Query 67494 AAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACC 67553 ||||| || | |||||| ||||||||||| | ||| | ||||| ||||| || | || Sbjct 30972 AAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATACCAACA 31031 Query 67554 ACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGG 67613 || || | ||||| | |||||| || | | |||||||| ||||| || || ||| Sbjct 31032 ACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAGTTGTTAAAAGAAGCGTATTGG 31091 Query 67614 AAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGT 67673 || || || ||||||||||| |||||||| ||||| ||||||||||| ||||||||||| Sbjct 31092 AAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTTTCTTCTTCTTGA 31151 Query 67674 CCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAA 67733 ||||| |||||||| | ||| ||| || | |||||| ||||| | || ||||||||| Sbjct 31152 CCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTTGTTTCACGAATTAGAGAAGAA 31211 Query 67734 GTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCA 67793 || ||||| ||||||||||||||| || | ||||||||| |||||||| || || || Sbjct 31212 GTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACACCGGCAACGCCT 31271 Query 67794 AGCATATGGAATGGGTGCATAAGGATGTT 67822 |||||||||||||||||||| || ||||| Sbjct 31272 AGCATATGGAATGGGTGCATTAGAATGTT 31300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566921687376000