Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq2029 610 8e-170 seq112 111 2e-19 >seq2029 Length=64692 Score = 610 bits (676), Expect = 8e-170 Identities = 755/1030 (73%), Gaps = 2/1030 (0%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || | ||| || || |||||||||| |||||||| || | Sbjct 62361 ATTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCT 62420 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| |||||| || || || || || || || |||| Sbjct 62421 GATCTTGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGGATATTTTTGGTATAGA 62480 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | || || || ||||| |||||||| || | || ||||| || || || || ||||||| Sbjct 62481 AAGTTTCAAATTCTGGATCTTCTGCAGCGCGAATTTCTTGTGAAACGAAATCGTAAGCAC 62540 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | | ||| | ||| ||||| | | ||| || | ||| ||||||| || | ||||||| Sbjct 62541 GTAAGTTTAAAGCTAGACCTACTACACCAATAGCACTCATCCAAAGCCCTGTTACAGGAA 62600 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| | ||||||||| || ||||| | ||||| ||| || | ||||||||| |||| Sbjct 62601 CAAAAAGCATAAAGAAGTGTAACCAACGTTTATTAGAAAAAGCTACACCAAAGATTTGAG 62660 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| || | ||| ||||| ||||| ||||| |||||||| ||||||| | || || | Sbjct 62661 ACCAAAATCTGTTAGCAGTTACCATAGAGTATGTTTCTTCTGCTTGAGTTGGGTTAAACG 62720 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| |||||||| |||||||||||| | || || || ||||| ||| |||||| Sbjct 62721 CACGGAATGTGTTTGCACCATCACCATCTTCAAAAAGTGTGTTTTCTACAGTAGCACCAT 62780 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 ||||||| |||| || ||| | || || | ||| ||||||||||||||||| || |||| Sbjct 62781 GAATGGCGCAAAGTAACGCAGCTCCTAGTACACCAGCTACACCCATCATATGGAAAGGGT 62840 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 | || |||||||||||||| ||||| | || | | || || || ||||| | || | Sbjct 62841 TTAAAGTCCAGTTATGGAAGCCTTGAAAAAATAAGATAAAACGGAAAATTGCCGCAACAC 62900 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| ||| || || ||||||| |||||||| | ||||| || || || ||| || Sbjct 62901 CAAAACTTGGTGCAAAGAACCAACCTGATTGACCTAATGGGTAAATTAGGAACACAGAAA 62960 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGA-TGAGA 67244 | ||||||| || ||| |||| || ||||| || || || ||||| || | ||| | Sbjct 62961 CGAAAACAGAAATTGGAGCAGAAAAAGCAATCGCGTTATATGGACGAATTTTTACTGA-A 63019 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || | |||||| || |||||||| |||||||| || | |||| ||||| || || Sbjct 63020 CGAGCAATTTCAAATTGACGAAGCATAAAACCAATCAGTGAAAAAGAACCGTGAAGGGCT 63079 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 || ||| |||| || |||||||||||| ||| || ||||| || |||| || || Sbjct 63080 ACGAAAGTCCAAAGACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCTGGG 63139 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 |||||||| | | | ||||||||||||| || || || || || || || || || Sbjct 63140 CCCCAAAGAAATAATAAAGAATGACCCATACTATTTGCTGGAGTAGAAACCGCAGCAGTT 63199 Query 67425 AGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACA 67484 | |||||| || || | ||| || || | || ||||| ||||| || ||| Sbjct 63200 AAGAAATTACAGCCTTCTAAATATGAAGTAGCTAAACCATGAGTATACCAAGAAGTTACA 63259 Query 67485 AACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAGT 67544 || ||||| || |||| ||| ||||||| ||| | ||| ||||| || || | ||||| Sbjct 63260 AATGTAGTTCCTGTAAACCAACCACCAAGTGCAAGATATGCAGTCGGGAATAAAAGTAAC 63319 Query 67545 CCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATCGAAC 67604 || ||||| || ||||| || || || || || |||||||||||||| ||||| ||| Sbjct 63320 CCTGACCATCCTACAAAAACGAAACGGTCGCGACGAAGCCAGTCATCAACAACATCAAAC 63379 Query 67605 CACCCCCGTT 67614 | || |||| Sbjct 63380 AAACCGCGTT 63389 Score = 376 bits (416), Expect = 3e-99 Identities = 400/525 (76%), Gaps = 2/525 (0%) Strand=Plus/Plus Query 68302 TTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATT 68361 || ||||| |||||||| || | |||| |||| || ||||||||||| || | |||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 68362 GCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCA 68421 | |||||||| ||||||||||||| || |||| | ||| || || | |||||| ||| Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 68422 ACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCC 68481 || ||||| ||||| ||||| ||||| ||||||||||| | ||| | || | |||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402 Query 68482 CATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAA 68541 || ||||| |||||||| | | |||| || | | ||| ||| | | | |||||| || Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462 Query 68542 GGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGA 68601 |||||||| ||||| ||||| || ||||| | |||||||||||||| || || || || Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522 Query 68602 AGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGA 68661 | ||| ||||| || ||| |||||| || ||||||||||||||||||||| || || | | Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582 Query 68662 AGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAG 68721 |||||||||| ||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642 Query 68722 GCGACGATGAA-ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCA 68780 |||| ||| || || || ||||| | | | ||||| ||||| | || || ||||| Sbjct 32643 GCGATGATAAACACTGA-AGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCA 32701 Query 68781 ACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 ||| | ||| | ||||| || ||| ||| ||||| || || || Sbjct 32702 ACCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAA 32746 Score = 351 bits (388), Expect = 1e-91 Identities = 347/449 (77%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 67855 GGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGGTTGAGA 67914 ||||||||||| ||||||||||||||||| ||||||||||| | || ||||||| | Sbjct 30852 GGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATACCAAGGTTGGCACGGTTGATA 30911 Query 67915 ACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTGAAGTTG 67974 | ||| ||||| || | ||| || ||| | | || |||||||||||| Sbjct 30912 ATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCTACAACTGATTGGTTGAAGTTG 30971 Query 67975 AAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATACCAACG 68034 |||||||| | |||||| ||||| || || ||| | ||||| ||||| |||||||| Sbjct 30972 AAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATACCAACA 31031 Query 68035 ACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGG 68094 || ||||| ||||| | |||||| || | ||||| |||||||| || || || || ||| Sbjct 31032 ACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAGTTGTTAAAAGAAGCGTATTGG 31091 Query 68095 AAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGA 68154 || || | |||||||||||| ||||| || ||||| ||||||||||| |||||||||||| Sbjct 31092 AAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTTTCTTCTTCTTGA 31151 Query 68155 CCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAA 68214 ||||| |||||||| | ||| || || | ||||| |||||||||| || |||||| Sbjct 31152 CCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTTGTTTCACGAATTAGAGAAGAA 31211 Query 68215 GTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCG 68274 || || || ||||| ||||| ||| ||| | || ||||||||||| || |||||||| Sbjct 31212 GTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACACCGGCAACGCCT 31271 Query 68275 AGCATATGGAAGGGGTGCATCAGGATGTT 68303 ||||||||||| |||||||| || ||||| Sbjct 31272 AGCATATGGAATGGGTGCATTAGAATGTT 31300 >seq112 Length=44222 Score = 111 bits (122), Expect = 2e-19 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||| Sbjct 35681 CTCCCCAGGTAGGACTTGAACCTACGACCAATCGATTAACAGTCGACCGCTCTACCACTG 35622 Query 35571 AGCTACTGAGGATT 35584 |||||||||||||| Sbjct 35621 AGCTACTGAGGATT 35608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572028657552000