Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq2029 576 2e-159 >seq2029 Length=64692 Score = 576 bits (638), Expect = 2e-159 Identities = 738/1009 (73%), Gaps = 6/1009 (1%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 |||||||||||| || || || || |||||||| || ||||| || |||| || || Sbjct 63366 GATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGGGTTACTT-TTATT 63308 Query 159366 CCC-ACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTG 159424 ||| ||||| ||||| || |||| |||||| |||| || || | ||||| || ||| Sbjct 63307 CCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACATTTGTAACTTCTTG 63248 Query 159425 GTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGT 159484 ||| || || ||| | |||| ||| ||| | || || ||| || | || || || || Sbjct 63247 GTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAATTTCTTAACTGCTGCGGT 63188 Query 159485 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159544 || || || || | ||||||||||||| | | | |||||||| || || |||| Sbjct 63187 TTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGGGGCCCAGAAGCTCA 63128 Query 159545 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604 || |||| || |||||||||||||| || | |||| ||| || || || ||||| Sbjct 63127 AGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTCGTAGCCCTTCACGG 63068 Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTA- 159663 | | || | || |||||||| ||||| ||||| |||||| | || ||| ||| | | Sbjct 63067 TTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCTCGT-TCAGTAAAAA 63009 Query 159664 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 159723 | ||||| || || || ||||| || |||| ||| ||| ||||||| || || |||| Sbjct 63008 TTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTTCGTTTCTGTGTTCC 62949 Query 159724 TCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 159783 | || |||||||| ||||| || ||||||| || || || ||||| || || |||| Sbjct 62948 TAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTTTGGTGTTGCGGCAA 62889 Query 159784 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATA 159843 | || | || | || || ||||||| || || |||||||| ||||| || ||||||| Sbjct 62888 TTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTTAAACCCTTTCCATA 62829 Query 159844 TGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTG 159903 ||||||| || |||||| ||||||| | || |||| | ||||| ||||| | ||||| Sbjct 62828 TGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCATTCATGGTGCTACTG 62769 Query 159904 TAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAA 159963 |||| |||||||| | ||||||||| || ||||| || || |||||| | ||| Sbjct 62768 TAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAA 62709 Query 159964 CTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 160023 |||||| || || || ||||||||||| ||||| ||| | || ||||| || ||||| | Sbjct 62708 CTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTGGTCTCAAATCTTTG 62649 Query 160024 GTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGG 160083 || | || |||||||| || || ||| | || ||||| ||| | ||||| ||||| | | Sbjct 62648 GTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTTTGTTCCTGTAACAG 62589 Query 160084 GTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTT-CGTGCTTACGAT 160142 | ||||||| ||||||| | | || || ||| |||| ||| |||||||||||| Sbjct 62588 GGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCT-TTAAACTTACGTGCTTACGAT 62530 Query 160143 TTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAA 160202 ||||| ||||| || | || |||||||||||||||||||| || ||||| |||||| Sbjct 62529 TTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAACTTTCTATACCAAA 62470 Query 160203 AACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAA 160262 || ||||| || |||||||| | ||||| ||| |||| || ||||| || |||||| Sbjct 62469 AATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAA 62410 Query 160263 AACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 || || | ||||| || || || || || | || ||||| ||||||| Sbjct 62409 AAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAAT 62361 Score = 392 bits (434), Expect = 4e-104 Identities = 404/526 (77%), Gaps = 2/526 (0%) Strand=Plus/Minus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 ||| || |||||||| ||| || | ||||| | || |||||||||| || ||| | Sbjct 32747 TTTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 32688 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 |||||||| ||| | || | ||||| || || || ||| |||| || |||| || | Sbjct 32687 AATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCAC 32629 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | ||||| || ||||| || |||||||| || || |||||||||| | || || |||| Sbjct 32628 CTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACA 32569 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 ||||||| |||||||| || | || |||| |||||||| ||| | || ||||| || | Sbjct 32568 ACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTA 32509 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | |||||||| || || ||||| || ||| | || ||||||||||||| |||||| | | Sbjct 32508 TTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCG 32449 Query 157878 TATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACC 157937 | | ||| ||| || | || |||| | | |||||||| |||||||||||| | || | || Sbjct 32448 TTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 32389 Query 157938 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 157997 ||||||||||||| || ||||| || || || || || ||||| ||||||||| | | Sbjct 32388 GTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAG 32329 Query 157998 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158057 |||||||| || |||| || ||||||||||||||||||| |||| ||||||| | |||| Sbjct 32328 CTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 32269 Query 158058 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 158103 | |||||||| ||||||| |||| | ||||||||||| || || || Sbjct 32268 TTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 378 bits (418), Expect = 8e-100 Identities = 353/449 (79%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 158102 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158161 ||||| || |||||||| ||||||||||| || ||||| || ||||| ||||| || | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 158162 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACA 158221 ||||||||||||||||| || || ||||| || || |||||||||| ||||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 158222 GAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCA 158281 || ||| ||| | |||||||| ||||||||||| ||||| || || |||||||| ||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 158282 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCC 158341 || |||||||||||||||||||| || |||||||||||||| || |||||||| ||||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 158342 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTC 158401 || || |||||| | ||||| ||||| ||||| || || ||||| || || | || | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 158402 TCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 158461 || || ||||| |||||| | || ||||||||||||||||| || | | ||| || Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 158462 GGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTT 158521 || ||||| | ||||| ||||| || | | ||||| || |||||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 158522 ATGCATGAGCGTAACGCACACAACTTCCC 158550 ||||||||||||||||| ||||||||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548349723152000