Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq2029 425 6e-114 >seq2029 Length=64692 Score = 425 bits (470), Expect = 6e-114 Identities = 721/1043 (69%), Gaps = 29/1043 (3%) Strand=Plus/Minus Query 73363 GTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGG 73422 |||||| ||| ||||||| ||| | | || |||||||| || | |||||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 73423 TCTTTTACTTTTA---CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 73479 ||||||||| || ||| || || ||| | || |||||||| ||||||||| Sbjct 63319 G---TTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTAC 63263 Query 73480 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTT 73539 || || || || ||||| || |||||| | || | |||||| | || || ||||| Sbjct 63262 ATTTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAATTT 63203 Query 73540 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTG 73599 |||||||| || || || || || | || |||||||||| | |||| || ||||| Sbjct 63202 CTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTG 63143 Query 73600 GGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTT 73659 ||| ||||| || ||||| ||| || || |||| ||| | || || || |||| || Sbjct 63142 GGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTT 63083 Query 73660 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGC 73719 ||||| | || || ||| ||| || ||||| |||||| | || ||||| ||||| Sbjct 63082 CGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGC 63023 Query 73720 AGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATT 73779 | || || ||||| || ||||| | |||||||| || || | || || Sbjct 63022 TCGTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTT 62963 Query 73780 CACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATT 73839 | | || ||||| || || ||||| || |||||||||| ||||| || Sbjct 62962 CGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTT 62903 Query 73840 CGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCT 73899 ||||| || ||||| || |||| ||| ||||| | || || ||||| || ||| | Sbjct 62902 TGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTT 62843 Query 73900 TAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCAT 73959 || || || ||||||||||||||||| ||| |||| || | || ||||| || ||||| Sbjct 62842 AAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCAT 62783 Query 73960 ACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAA 74019 |||||||| || ||| | |||||| | | |||||| || | | Sbjct 62782 TCATGGTGCTACTGTAGAAAACACACTTTTTGAAGA---------------TG--GTGAT 62740 Query 74020 GATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTAT 74079 | | ||| | || ||| | || || | || || || | |||||| || || ||| Sbjct 62739 GGTGCAAAC----ACATTCCGTGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTAT 62684 Query 74080 GATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATT 74139 | | |||||||||||||| ||||| || || |||||| |||| ||||| || ||| | | Sbjct 62683 GGTAACTGCTAACAGATTTTGGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTG 62624 Query 74140 CTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTAT 74199 ||||||||| ||||| | || || ||||| | || | |||| |||| ||| | Sbjct 62623 GTTACACTTCTTTATGCTTTTTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGT 62564 Query 74200 CGTAGGTCTAGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 74258 ||||||||||| |||| |||| | || ||||| || || || ||||| || | || | Sbjct 62563 AGTAGGTCTAGC-TTTAAACTTACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTG 62505 Query 74259 CAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGA 74318 ||||||| ||||| |||||||| ||||| || || || || ||| | || |||||||| Sbjct 62504 CAGAAGATCCAGAATTTGAAACTTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTC 62445 Query 74319 GAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCT 74378 | || |||||| | || ||||| || ||||| || |||| ||||| || || || | Sbjct 62444 GTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTT 62385 Query 74379 TGCCACGAGGCAACGCACTATAA 74401 | ||||| || ||||| || ||| Sbjct 62384 TACCACGTGGAAACGCTCTTTAA 62362 Score = 363 bits (402), Expect = 2e-95 Identities = 397/525 (76%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 |||||||||||||| || |||||| || || | ||| | |||||||||||||| ||| Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCT-TGTTTCATTGTAGCATTCATCGCTGCTCC 72353 ||||| || | | ||||||| || | ||||| || | || || ||||| || || Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTT-ATCATCGCTTTTATCGCAGCACC 32628 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 ||| || |||||||| || ||| | || |||||| | ||||| | ||||| || ||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 |||||| ||||||||| | |||| |||| |||||||| || ||||| ||||| || || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 ||||||||||| || | ||||| ||||| || ||||| ||||||||||| | | | Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 || || ||| | | ||||||| | | ||||||||| | |||||||| |||| | | | Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 |||| ||| | || ||||| || || ||||||||||| || |||||||| || Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 |||||| | | || ||| ||||||| ||||| ||||||||||||||||| ||||||| Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAA 72758 || ||||| || ||||||||| |||| |||||||| || || || Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 325 bits (360), Expect = 5e-84 Identities = 351/463 (76%), Gaps = 4/463 (1%) Strand=Plus/Minus Query 72757 AACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTC 72816 ||||| ||||||||||| ||||||||| ||| || || ||| | || |||||| | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 72817 TTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAAC 72876 ||| ||| ||||||||||||||||| ||||| |||||||| | || ||||| |||||| Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 72877 GAGAGTCAA--AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTG 72934 || ||| ||| | || || || ||||| |||||||||||||| || ||||| |||| Sbjct 31180 GAA--TCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTG 31123 Query 72935 CTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTT 72994 | |||||||| ||||||||| | ||||| ||||| || || || || ||||||||||||| Sbjct 31122 CAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTT 31063 Query 72995 CATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTA 73054 ||||||| |||||| | |||| | || || || || | ||||| || | | |||| Sbjct 31062 CATTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTA 31003 Query 73055 TCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAA 73114 | | || ||||| |||||| | || || ||||||||||||||||||||||||||| || Sbjct 31002 TTTCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCAC 30943 Query 73115 ACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAG 73174 | || || | || |||| || || | ||| | || |||||||| ||||||| Sbjct 30942 AAGGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAG 30883 Query 73175 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 73217 | |||||||| | || || ||||||||||| |||| |||| Sbjct 30882 TAATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGC 30840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572847820688000