Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq326 118 1e-20 seq538 111 2e-18 seq3183 107 2e-17 seq1643 104 3e-16 seq2121 100 3e-15 seq842 87.8 2e-11 seq2434 86.0 8e-11 >seq326 Length=80286 Score = 118 bits (130), Expect = 1e-20 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 1630084 GTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGGTGCCCGCC 1630143 ||||| ||||| ||||| ||||||||||||| ||||||||| |||||| ||||| Sbjct 59707 GTGTCATTAAACACGCGCAGCATGGGCACGATGCCGTTGGATGTGCCGTTAGTGCCGCGG 59766 Query 1630144 ACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGACTTG 1630203 | ||| | ||||| |||||| | |||||| | | ||| ||||||||||| |||||| Sbjct 59767 ATGTACGAGCCGGTGGCGCGAATGTTGTGCATTGACAGGCCAATGCCGCCGGCAGACTTG 59826 Query 1630204 GAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || || || |||| |||||||| || |||||||| Sbjct 59827 GAAATACCTGCACACTCCTTGAGCGTATCATAGATGCC 59864 >seq538 Length=19016 Score = 111 bits (122), Expect = 2e-18 Identities = 126/168 (75%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 869677 CACCTCTGCCACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCC 869736 |||||||| | || ||||||| |||||||||| || ||||||||||| |||||||| Sbjct 16074 CACCTCTGGGATCTGCACCTCCTGCATGAACCGGGCGCCCAGGTTCTCGTTGACGATGCC 16015 Query 869737 GTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG 869796 ||| ||| ||||| ||||| || ||||| | |||||| ||||||||||||||| Sbjct 16014 GTCTGAGGCCGCGAAGAAAGCGAGAACGTGAGACACAAAGTGCTTCTCGTCGTCGCTGAG 15955 Query 869797 CGACACCCAGTGGACGGTGTCGGCGCTG---AGGTCCACCTCCTCGGC 869841 | | |||||| | ||| | ||||| || ||||| ||||| || Sbjct 15954 CTTCTCCCAGT---CCTTGTAGTCGCTGCCCAGATCCACTTCCTCAGC 15910 Score = 111 bits (122), Expect = 2e-18 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| ||| || | ||||| ||||| ||||||||||||||| || |||||| Sbjct 16851 CCTTCGTCACGAGAAATGAGCTCGTTTGAAAAGGTGAGGCCGGGCATGAGCCCTCGCTTC 16792 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| |||||| ||| ||||| ||||||||||| ||| ||||| Sbjct 16791 TTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCCACGCAAGCAAAC 16732 Query 869300 CCGATGAGCCGCTC 869313 | || || ||||| Sbjct 16731 GCAATCAGGCGCTC 16718 Score = 98.7 bits (108), Expect = 1e-14 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 868742 AGCGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCG 868801 |||||||||| |||||||| || ||||||| | | ||||| ||||| | || Sbjct 17300 AGCGAGATCATGTCCATCCAGTCAAAGGGGTTGGCCATGTTGTACTGCTTGGGGTTGCCC 17241 Query 868802 AGCGACGCGAGCAGGCGGTCGGCGACA-AACTCGATGTACTGGCACATGAGGCCGGCGTT 868860 |||| | | ||||| ||||| || ||| ||||| |||||||| | ||| || | ||| Sbjct 17240 AGCGCCACTAGCAGCCGGTCCGC-ACAGAACTCAATGTACTGCCCCATCAGCACCTTGTT 17182 Query 868861 CATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGC 868920 ||||||||| | |||| ||||||| || | | |||||| |||||||| | || || Sbjct 17181 CATGCCGATCAAATCCACGGGCAGCGCGTCACAGATAAACTCCTTCTCGATGGCAACCGC 17122 Query 868921 CTC 868923 ||| Sbjct 17121 CTC 17119 >seq3183 Length=41426 Score = 107 bits (118), Expect = 2e-17 Identities = 152/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||||||||||||||| || | || Sbjct 426 GCTTGGCCAGCTCGCCGGGCAGCACCAGGCGCACGGCGGTCTGGATCTCCCGAGA--CG- 482 Query 1254403 TCGTGTTGCGCTTGTTCG-AGTGCGCCAGAC--GGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 || | || |||| || | ||| | || || | || ||||| | || || | Sbjct 483 TCAGGGTGGGCTTCTTGTTAACGCGGCTGAGCTGGGCAGCGGCGGTGGCAATCTTCTCAA 542 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 | |||| || |||||||| | || | ||| |||||| ||||||||| ||||| Sbjct 543 ACTGGTCGGCGATGAACGAGTTGAGGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGG 602 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||||||||||||| ||||| Sbjct 603 GGTGCACCTGCTTGAGCACCTTGAAGATG 631 >seq1643 Length=669 Score = 104 bits (114), Expect = 3e-16 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||||||||| |||||||||||||| || | || Sbjct 665 GCTTGGCCAGCTCGCCGGGCAGCACCAGGCGCACAGCGGTCTGGATCTCCCGGGA--CG- 609 Query 1254403 TCGTGTTGCGCTTGTTCGAGT-GCGCCAGAC--GGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 || | || |||| || | ||| | || || | || ||||| | || || | Sbjct 608 TCAGGGTGGGCTTCTTGTTGACGCGGCTGAGCTGGGCAGCGGCGGTGGCAATCTTCTCAA 549 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 | |||| || |||||||| | || | ||| |||||| ||||||||| ||||| Sbjct 548 ACTGGTCGGCGATGAACGAGTTGAGGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGG 489 Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||||||||||||| ||||| Sbjct 488 GGTGCACCTGCTTGAGCACCTTGAAGATG 460 >seq2121 Length=110933 Score = 100 bits (110), Expect = 3e-15 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||||||| |||||||| | ||||| || || ||| | ||||| ||| Sbjct 88382 GCCGCCAACTACCTCAACATCAAGGCGCTGCTGGACCTAACATGCCTCACAGTGGCAAAC 88323 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||||||||||||||| |||| |||||||| || ||||| || |||||| Sbjct 88322 ATGATCAAGGGCAAGACGCCAGAGGAGATTCGAAAGACGTTCAACATC 88275 >seq842 Length=68087 Score = 87.8 bits (96), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| | ||||||||||||| ||||||| |||| |||||| || ||| ||||||| Sbjct 17386 CGTTAATGAACGAGTTCATGATTGACATCGCCTTGGAGGAGATACCGGTGTCTGGGTGCA 17327 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| ||||||||||||||| Sbjct 17326 CCTGCTTCAGCACCTTGTAGATG 17304 >seq2434 Length=50316 Score = 86.0 bits (94), Expect = 8e-11 Identities = 148/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCT-CTTGG 1573953 ||| || || ||||| ||||||||||| ||||| ||| ||||| | | || || || Sbjct 14118 GGGCCCCCCAGGCACCGGCAAGACCACCAGCATTCTGTGCCTGGCCCACGAGCTGCTGGG 14177 Query 1573954 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACG 1574013 || | || ||| |||| ||||| || || || ||||| ||||| |||||| | || | Sbjct 14178 GCCCAGCTTCCGG-GAGGGTGTGCTGGAGCTGAATGCGTCTGACGACCGCGGCATTGATG 14236 Query 1574014 TCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072 |||||||||| | |||||| || ||| | | ||| |||||||| || || Sbjct 14237 TCGTGCGCAACAAGATCAAGATGTTTGCGCAGCAGAAGGT-GACGCTGCCGCCGGGGCGA 14295 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGAC 1574102 || ||| | | ||||| || ||||| ||| Sbjct 14296 CAGAAGATTGTGATCCTGGATGAGGCAGAC 14325 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1574117 GGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCT 1574176 |||||||||||| ||||| ||||||||| | || || ||| || |||||||| | Sbjct 14565 GGCCCAGCAGGCGCTGCGTCGCACCATGGAGATCTACTCCTCCACCACTCGCTTTGCGTT 14624 Query 1574177 GGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATT 1574231 ||| |||||||| || || | |||| ||| || |||| || |||||||||||| Sbjct 14625 GGCCTGCAACACATCCTCCAAAATCATTGAGCCCATCCAGAGCCGCTGCGCCATT 14679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106843767141200