Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq326 118 1e-20
seq538 111 2e-18
seq3183 107 2e-17
seq1643 104 3e-16
seq2121 100 3e-15
seq842 87.8 2e-11
seq2434 86.0 8e-11
>seq326
Length=80286
Score = 118 bits (130), Expect = 1e-20
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 1630084 GTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGGTGCCCGCC 1630143
||||| ||||| ||||| ||||||||||||| ||||||||| |||||| |||||
Sbjct 59707 GTGTCATTAAACACGCGCAGCATGGGCACGATGCCGTTGGATGTGCCGTTAGTGCCGCGG 59766
Query 1630144 ACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGACTTG 1630203
| ||| | ||||| |||||| | |||||| | | ||| ||||||||||| ||||||
Sbjct 59767 ATGTACGAGCCGGTGGCGCGAATGTTGTGCATTGACAGGCCAATGCCGCCGGCAGACTTG 59826
Query 1630204 GAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241
|| || || |||| |||||||| || ||||||||
Sbjct 59827 GAAATACCTGCACACTCCTTGAGCGTATCATAGATGCC 59864
>seq538
Length=19016
Score = 111 bits (122), Expect = 2e-18
Identities = 126/168 (75%), Gaps = 6/168 (4%)
Strand=Plus/Minus
Query 869677 CACCTCTGCCACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCC 869736
|||||||| | || ||||||| |||||||||| || ||||||||||| ||||||||
Sbjct 16074 CACCTCTGGGATCTGCACCTCCTGCATGAACCGGGCGCCCAGGTTCTCGTTGACGATGCC 16015
Query 869737 GTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG 869796
||| ||| ||||| ||||| || ||||| | |||||| |||||||||||||||
Sbjct 16014 GTCTGAGGCCGCGAAGAAAGCGAGAACGTGAGACACAAAGTGCTTCTCGTCGTCGCTGAG 15955
Query 869797 CGACACCCAGTGGACGGTGTCGGCGCTG---AGGTCCACCTCCTCGGC 869841
| | |||||| | ||| | ||||| || ||||| ||||| ||
Sbjct 15954 CTTCTCCCAGT---CCTTGTAGTCGCTGCCCAGATCCACTTCCTCAGC 15910
Score = 111 bits (122), Expect = 2e-18
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|||||||| ||| || | ||||| ||||| ||||||||||||||| || ||||||
Sbjct 16851 CCTTCGTCACGAGAAATGAGCTCGTTTGAAAAGGTGAGGCCGGGCATGAGCCCTCGCTTC 16792
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|||||||| ||||||| |||||| ||| ||||| ||||||||||| ||| |||||
Sbjct 16791 TTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCCACGCAAGCAAAC 16732
Query 869300 CCGATGAGCCGCTC 869313
| || || |||||
Sbjct 16731 GCAATCAGGCGCTC 16718
Score = 98.7 bits (108), Expect = 1e-14
Identities = 133/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 868742 AGCGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCG 868801
|||||||||| |||||||| || ||||||| | | ||||| ||||| | ||
Sbjct 17300 AGCGAGATCATGTCCATCCAGTCAAAGGGGTTGGCCATGTTGTACTGCTTGGGGTTGCCC 17241
Query 868802 AGCGACGCGAGCAGGCGGTCGGCGACA-AACTCGATGTACTGGCACATGAGGCCGGCGTT 868860
|||| | | ||||| ||||| || ||| ||||| |||||||| | ||| || | |||
Sbjct 17240 AGCGCCACTAGCAGCCGGTCCGC-ACAGAACTCAATGTACTGCCCCATCAGCACCTTGTT 17182
Query 868861 CATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGC 868920
||||||||| | |||| ||||||| || | | |||||| |||||||| | || ||
Sbjct 17181 CATGCCGATCAAATCCACGGGCAGCGCGTCACAGATAAACTCCTTCTCGATGGCAACCGC 17122
Query 868921 CTC 868923
|||
Sbjct 17121 CTC 17119
>seq3183
Length=41426
Score = 107 bits (118), Expect = 2e-17
Identities = 152/209 (73%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||||||||||||||| || | ||
Sbjct 426 GCTTGGCCAGCTCGCCGGGCAGCACCAGGCGCACGGCGGTCTGGATCTCCCGAGA--CG- 482
Query 1254403 TCGTGTTGCGCTTGTTCG-AGTGCGCCAGAC--GGCCGGCCTCGGTGCCGATGCGGTCGA 1254459
|| | || |||| || | ||| | || || | || ||||| | || || |
Sbjct 483 TCAGGGTGGGCTTCTTGTTAACGCGGCTGAGCTGGGCAGCGGCGGTGGCAATCTTCTCAA 542
Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519
| |||| || |||||||| | || | ||| |||||| ||||||||| |||||
Sbjct 543 ACTGGTCGGCGATGAACGAGTTGAGGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGG 602
Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
||||||||||||||||||||||| |||||
Sbjct 603 GGTGCACCTGCTTGAGCACCTTGAAGATG 631
>seq1643
Length=669
Score = 104 bits (114), Expect = 3e-16
Identities = 151/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||||||||| |||||||||||||| || | ||
Sbjct 665 GCTTGGCCAGCTCGCCGGGCAGCACCAGGCGCACAGCGGTCTGGATCTCCCGGGA--CG- 609
Query 1254403 TCGTGTTGCGCTTGTTCGAGT-GCGCCAGAC--GGCCGGCCTCGGTGCCGATGCGGTCGA 1254459
|| | || |||| || | ||| | || || | || ||||| | || || |
Sbjct 608 TCAGGGTGGGCTTCTTGTTGACGCGGCTGAGCTGGGCAGCGGCGGTGGCAATCTTCTCAA 549
Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519
| |||| || |||||||| | || | ||| |||||| ||||||||| |||||
Sbjct 548 ACTGGTCGGCGATGAACGAGTTGAGGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGG 489
Query 1254520 GGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
||||||||||||||||||||||| |||||
Sbjct 488 GGTGCACCTGCTTGAGCACCTTGAAGATG 460
>seq2121
Length=110933
Score = 100 bits (110), Expect = 3e-15
Identities = 87/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||||||||||||||| |||||||| | ||||| || || ||| | ||||| |||
Sbjct 88382 GCCGCCAACTACCTCAACATCAAGGCGCTGCTGGACCTAACATGCCTCACAGTGGCAAAC 88323
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
||||||||||||||| |||| |||||||| || ||||| || ||||||
Sbjct 88322 ATGATCAAGGGCAAGACGCCAGAGGAGATTCGAAAGACGTTCAACATC 88275
>seq842
Length=68087
Score = 87.8 bits (96), Expect = 2e-11
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525
|||| | ||||||||||||| ||||||| |||| |||||| || ||| |||||||
Sbjct 17386 CGTTAATGAACGAGTTCATGATTGACATCGCCTTGGAGGAGATACCGGTGTCTGGGTGCA 17327
Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548
||||||| |||||||||||||||
Sbjct 17326 CCTGCTTCAGCACCTTGTAGATG 17304
>seq2434
Length=50316
Score = 86.0 bits (94), Expect = 8e-11
Identities = 148/210 (70%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCT-CTTGG 1573953
||| || || ||||| ||||||||||| ||||| ||| ||||| | | || || ||
Sbjct 14118 GGGCCCCCCAGGCACCGGCAAGACCACCAGCATTCTGTGCCTGGCCCACGAGCTGCTGGG 14177
Query 1573954 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACG 1574013
|| | || ||| |||| ||||| || || || ||||| ||||| |||||| | || |
Sbjct 14178 GCCCAGCTTCCGG-GAGGGTGTGCTGGAGCTGAATGCGTCTGACGACCGCGGCATTGATG 14236
Query 1574014 TCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072
|||||||||| | |||||| || ||| | | ||| |||||||| || ||
Sbjct 14237 TCGTGCGCAACAAGATCAAGATGTTTGCGCAGCAGAAGGT-GACGCTGCCGCCGGGGCGA 14295
Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGAC 1574102
|| ||| | | ||||| || ||||| |||
Sbjct 14296 CAGAAGATTGTGATCCTGGATGAGGCAGAC 14325
Score = 86.0 bits (94), Expect = 8e-11
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1574117 GGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCT 1574176
|||||||||||| ||||| ||||||||| | || || ||| || |||||||| |
Sbjct 14565 GGCCCAGCAGGCGCTGCGTCGCACCATGGAGATCTACTCCTCCACCACTCGCTTTGCGTT 14624
Query 1574177 GGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATT 1574231
||| |||||||| || || | |||| ||| || |||| || ||||||||||||
Sbjct 14625 GGCCTGCAACACATCCTCCAAAATCATTGAGCCCATCCAGAGCCGCTGCGCCATT 14679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106843767141200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |