Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq622 149 1e-29 seq3183 145 1e-28 seq1643 118 2e-20 seq2362 111 2e-18 seq2434 105 1e-16 seq538 105 1e-16 seq1467 102 1e-15 seq326 100 5e-15 seq232 96.9 5e-14 seq842 93.3 7e-13 seq498 89.7 8e-12 seq3285 86.0 1e-10 >seq622 Length=11311 Score = 149 bits (164), Expect = 1e-29 Identities = 181/242 (75%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| |||||||||| ||||||| |||||| ||| Sbjct 687 TGAACTTGGTGACGGCCTTGGTGCCCTCGCTGACGGCGTGCTTGGCCAGCTCGCCGGGCA 628 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG- 1485588 | ||||||||| |||||||||||||| | | | || || | || |||| || || Sbjct 627 GCACCAGGCGCACAGCGGTCTGGATCTCCC--GAGACG-TCAGGGTGGGCTTCTTGTTGA 571 Query 1485589 CGCGCC--AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||| | || || | || ||||| | || || | | |||| || ||||||| Sbjct 570 CGCGGCTGAGCTGGGCAGCGGCGGTGGCAATCTTCTCAAACTGGTCGGCGATGAACGAGT 511 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 | | ||| | ||| || ||| ||||||||| |||||||||||| ||||||||||||| Sbjct 510 TGAGGATTGCCATGGACTTGGAGGAGATGCCGGTGTCGGGGTGCACTTGCTTGAGCACCT 451 Query 1485707 TG 1485708 || Sbjct 450 TG 449 >seq3183 Length=41426 Score = 145 bits (160), Expect = 1e-28 Identities = 179/242 (74%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| ||||||||| ||||||| |||||| ||| Sbjct 387 TGAACTTGGTCACGGCCTTGGTGCCCTCGCTTACGGCGTGCTTGGCCAGCTCGCCGGGCA 446 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCG---CTTGTTAG 1485586 | |||||||||||||||||||||||| | | | || || | || | ||||||| Sbjct 447 GCACCAGGCGCACGGCGGTCTGGATCTCCC--GAGACG-TCAGGGTGGGCTTCTTGTTAA 503 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 ||| || || | || ||||| | || || | | |||| || ||||||| Sbjct 504 CGCGGCTGAGCTGGGCAGCGGCGGTGGCAATCTTCTCAAACTGGTCGGCGATGAACGAGT 563 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 | | ||| | ||| || ||| ||||||||| |||||||||||||||||||||||||| Sbjct 564 TGAGGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTGAGCACCT 623 Query 1485707 TG 1485708 || Sbjct 624 TG 625 >seq1643 Length=669 Score = 118 bits (130), Expect = 2e-20 Identities = 154/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 1485505 GCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTG 1485564 |||||| ||||||| |||||| ||| | ||||||||| |||||||||||||| |||| Sbjct 669 GCGTGCTTGGCCAGCTCGCCGGGCAGCACCAGGCGCACAGCGGTCTGGATCTCCCGGGA- 611 Query 1485565 CCGATCGTGTTGCGCTTGTTAGTG-CGCGCCAG-GC-GGCCGGCCTCGGTGCCGATGCGG 1485621 || || | || |||| || || |||| | | || || | || ||||| | || Sbjct 610 -CG-TCAGGGTGGGCTTCTTGTTGACGCGGCTGAGCTGGGCAGCGGCGGTGGCAATCTTC 553 Query 1485622 TCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACG 1485681 || | | |||| || |||||||| | ||| | ||| || ||| ||||||||| | Sbjct 552 TCAAACTGGTCGGCGATGAACGAGTTGAGGATGGCCATGGACTTGGAGGAGATGCCGGTG 493 Query 1485682 TCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||||||||||||||||||||||||| Sbjct 492 TCGGGGTGCACCTGCTTGAGCACCTTG 466 >seq2362 Length=5612 Score = 111 bits (122), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| |||||||||| ||||||| |||||| ||| Sbjct 115 TGAACTTGGTGACGGCCTTGGTGCCCTCGCTGACGGCGTGCTTGGCCAGCTCGCCGGGCA 56 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | |||||||||||||||||||||||| || Sbjct 55 GCACCAGGCGCACGGCGGTCTGGATCTCCCG 25 >seq2434 Length=50316 Score = 105 bits (116), Expect = 1e-16 Identities = 156/213 (73%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCT-CTTGG 2019090 |||||| || ||||| ||||||||||| ||||| ||||||||| | || ||| || || Sbjct 14118 GGGCCCCCCAGGCACCGGCAAGACCACCAGCATTCTGTGCCTGGCCCACGAGCTGCTGGG 14177 Query 2019091 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACG 2019150 || | || ||| |||| ||||| || || |||||||| ||||| |||||| | || | Sbjct 14178 GCCCAGCTTCCG-GGAGGGTGTGCTGGAGCTGAATGCGTCTGACGACCGCGGCATTGATG 14236 Query 2019151 TCGTGCGTAGAATCATCAAGCATCACGCTT-CG-AAAAGAA-TCGAC-CTGCCGCCCGGC 2019206 ||||||| | | |||||| | | || || | |||| ||| |||||||| || Sbjct 14237 TCGTGCGCAACAAGATCAAG----ATGTTTGCGCAGCAGAAGGTGACGCTGCCGCCGGGG 14292 Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGAC 2019239 || || ||| | | ||||| |||||||| ||| Sbjct 14293 CGACAGAAGATTGTGATCCTGGATGAGGCAGAC 14325 Score = 87.8 bits (96), Expect = 3e-11 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 2019254 GGCCCAGCAGGCCCTCCGATCG-ACCATGGAAAAGTACACCAACACGACGCGGTTTGCGC 2019312 |||||||||||| || || ||| |||||||| | ||| || ||| || || |||||| Sbjct 14565 GGCCCAGCAGGCGCTGCG-TCGCACCATGGAGATCTACTCCTCCACCACTCGCTTTGCGT 14623 Query 2019313 TGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCAT 2019367 ||||||||||||| || || | |||| || || |||||||||| |||||||| Sbjct 14624 TGGCCTGCAACACATCCTCCAAAATCATTGAGCCCATCCAGAGCCGCTGCGCCAT 14678 >seq538 Length=19016 Score = 105 bits (116), Expect = 1e-16 Identities = 123/164 (75%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 794503 ATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGA 794562 ||||||||||| ||||| | ||||| || | |||| |||||||| || |||||| || Sbjct 16496 ATCCACTTCATTGCCCAGTGCGCCTTCTTGCGCACCACAGGCACCGTCTCCATGGCGTGA 16437 Query 794563 AAGAGGTGGTCCTTCTCGACCGG--GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGG 794620 || || | |||||||| | || |||||||| ||| || || | || | ||| Sbjct 16436 AACAGCTTCTCCTTCTC--CTGGCTGTCCTTGATGTACGTCTCCAGAAGCAAGCTGTACA 16379 Query 794621 TCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 |||| ||||||||||| || ||||| ||||||||||| || ||| Sbjct 16378 TCTCGGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAG 16335 Score = 104 bits (114), Expect = 4e-16 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 793950 AGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCG 794009 |||||||||| |||||||| || ||||||||| | ||| ||||| | || Sbjct 17300 AGCGAGATCATGTCCATCCAGTCAAAGGGGTTGGCCATGTTGTACTGCTTGGGGTTGCCC 17241 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 |||| | | ||||| ||||| || ||| ||||||||||| | ||| || | |||| Sbjct 17240 AGCGCCACTAGCAGCCGGTCCGCACAGAACTCAATGTACTGCCCCATCAGCACCTTGTTC 17181 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||||| | |||||||||||| || | || |||||| |||||||| | || ||| Sbjct 17180 ATGCCGATCAAATCCACGGGCAGCGCGTCACAGATAAACTCCTTCTCGATGGCAACCGCC 17121 Query 794130 TC 794131 || Sbjct 17120 TC 17119 Score = 98.7 bits (108), Expect = 2e-14 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| ||| || | ||||| |||| ||||||||||||||| || |||||| Sbjct 16851 CCTTCGTCACGAGAAATGAGCTCGTTTGAAAAGGTGAGGCCGGGCATGAGCCCTCGCTTC 16792 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 |||||||| ||||||| ||||| ||| ||||| ||||||||||| ||| ||||| Sbjct 16791 TTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCCACGCAAGCAAA 16733 Score = 89.7 bits (98), Expect = 8e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 796151 CCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGT 796210 |||| || | || ||||||| |||||| ||| || |||||||||| |||||||||| Sbjct 16072 CCTCTGGGATCTGCACCTCCTGCATGAACCGGGCGCCCAGGTTCTCGTTGACGATGCCGT 16013 Query 796211 CGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 | ||| ||||| || ||||| ||||| | |||||| |||||||||||||||| Sbjct 16012 CTGAGGCCGCGAAGAAAGCGAGAACGTGAGACACAAAGTGCTTCTCGTCGTCGCTGAGC 15954 >seq1467 Length=668 Score = 102 bits (112), Expect = 1e-15 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| |||||| ||| ||||||| |||||| ||| Sbjct 97 TGAACTTGGTCACGGCCTTGGTGCCCTCGCTGACGGCATGCTTGGCCAGCTCGCCGGGCA 38 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | |||||||||||||||||||||||| || Sbjct 37 GCACCAGGCGCACGGCGGTCTGGATCTCCCG 7 >seq326 Length=80286 Score = 100 bits (110), Expect = 5e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2073559 GTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCGTTGGTGCCCGCC 2073618 ||||| ||||| ||||| ||||||||||| | ||||||||| |||||| ||||| Sbjct 59707 GTGTCATTAAACACGCGCAGCATGGGCACGATGCCGTTGGATGTGCCGTTAGTGCCGCGG 59766 Query 2073619 ACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGCCTTG 2073678 | ||| | ||| | |||||| | |||||| | | ||| ||||||||||| | |||| Sbjct 59767 ATGTACGAGCCGGTGGCGCGAATGTTGTGCATTGACAGGCCAATGCCGCCGGCAGACTTG 59826 Query 2073679 GAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || || || |||| || ||||| || |||||||| Sbjct 59827 GAAATACCTGCACACTCCTTGAGCGTATCATAGATGCC 59864 >seq232 Length=39391 Score = 96.9 bits (106), Expect = 5e-14 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||| |||||| | ||||| |||||| ||| Sbjct 4707 TGTACTTGGTGACTGCCTTGGTGCCCTCGCTGACAGCGTGCTTTGCCAGCTCGCCGGGCA 4766 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 | ||||||||||| ||||||||||| |||| Sbjct 4767 GCACGAGGCGCACGGCAGTCTGGATCTCCCGGG 4799 >seq842 Length=68087 Score = 93.3 bits (102), Expect = 7e-13 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||||||||||||||| ||||| ||| |||||| ||| ||| || || ||| Sbjct 17849 TGAACTTGGTGACGGCCTTGGTGCCCTCGCTGACTGCGTGCTTGGACAGCTCTCCTGGCA 17790 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 ||| |||||||| |||||||||||||| || Sbjct 17789 GGATGAGGCGCACAGCGGTCTGGATCTCACG 17759 >seq498 Length=39311 Score = 89.7 bits (98), Expect = 8e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 429632 CACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGA 429691 ||||||||| ||||||||| || || | |||||||||||||||||||||||||||| Sbjct 25897 CACCTTCCGCCTCAACCTGAGTGTCACCTCCCCCTACAACGCCGACTTTGACGGCGACGA 25956 Query 429692 GATGAACCTGCACGTGCCCCAG 429713 ||||||| ||||| || | ||| Sbjct 25957 GATGAACATGCACATGGCGCAG 25978 >seq3285 Length=63365 Score = 86.0 bits (94), Expect = 1e-10 Identities = 144/209 (69%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || |||||||| |||||||| ||||| ||||| | |||||| ||| ||||| | Sbjct 18867 CCAGGCATGAGCTGCCGCTTCTTCAGCCAGAAGATCGAGCAGAAAGAGCCAGAGAAGTGG 18808 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 |||||||| || || || |||| |||||||| ||||| | || |||| Sbjct 18807 ATGCCCTCCACACACGCGTAGGCGACAAGCCGCTCTGCAAAGCAGCTGCTGCTCTCT--- 18751 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 ||||||||||||||||||| ||||| ||| || |||| | ||||| | ||| Sbjct 18750 ---ATCCACTTCATCGCCCACTGCGCCTTCTTCTGTACGCAGGGAATGGTGTCCACCGCG 18694 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTC 794588 | ||||| |||| || || ||||| Sbjct 18693 TGGAAGAGCATGTCCCGCTGCACTGGGTC 18665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915863451580400