Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3244 104 2e-17 seq3143 102 7e-17 >seq3244 Length=4747 Score = 104 bits (114), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || ||||||||| | ||| ||||||||| | || || | |||||| || ||||||||| Sbjct 3106 GACAAAGAAGGCATCCCCCCCGATCAGCAGCGTCTCATCTTTGCGGGCAAGCAGCTGGAG 3165 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || |||| ||||||||||| || |||||||| || |||||| ||||| || Sbjct 3166 GATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACCTGGTGCTG 3225 Query 107769 AGATTGCGAGGGGGAAATAATAAAAATATTTGT 107801 | ||||||| || || |||||||||| Sbjct 3226 CGCCTGCGAGGAGG----CATGCAAATATTTGT 3254 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || ||||| ||| | ||| ||||||||| | || || | ||| || || ||||||||| Sbjct 3558 GACAAAGAGGGCATCCCCCCCGATCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAG 3617 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || |||| ||||||||||| || |||||||| || |||||| ||||| || Sbjct 3618 GATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACCTGGTGCTG 3677 Query 107769 AGATTGCGAGGGGG 107782 | ||||||| || Sbjct 3678 CGCCTGCGAGGCGG 3691 >seq3143 Length=13185 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 107657 AGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAA 107716 |||| | ||| || |||||| | || || | |||||| || ||||||||||||| | Sbjct 6996 AGGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCG 7055 Query 107717 AACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCG 107776 ||| |||||||||||||||| || |||||||| ||| ||||| |||||||| | |||| Sbjct 7056 CACACTGGCGGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGTTGCGCCTGCG 7115 Query 107777 AGGGGG 107782 || || Sbjct 7116 CGGAGG 7121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398859299280400