Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq2029 567 9e-157 >seq2029 Length=64692 Score = 567 bits (628), Expect = 9e-157 Identities = 743/1018 (73%), Gaps = 8/1018 (1%) Strand=Plus/Minus Query 178938 GTTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGG 178997 ||| ||||| | |||||||||||| ||| || || || || ||||| || ||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 178998 ACTCCTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTT 179056 | || || ||||| ||||| |||||||| |||| |||||| |||| || || | | Sbjct 63319 GTTACTT-TTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACAT 63261 Query 179057 TTGTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTC 179116 |||| || |||||| || |||||| | |||| ||| ||| | ||||| ||| |||| Sbjct 63260 TTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA-TTTC 63202 Query 179117 TTA-CGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 179175 ||| | || || || || || || || || ||||||||||||| | | | |||||| Sbjct 63201 TTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGG 63142 Query 179176 GGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTC 179235 || || || |||| || |||| || |||||||||||||| || || |||| |||| Sbjct 63141 GGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTC 63082 Query 179236 GTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCA 179295 || || || |||||| | || | || ||||| || ||||||||||| |||||| | || Sbjct 63081 GTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCT 63022 Query 179296 CGTCTCA-TCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATT 179354 ||| ||| | || ||||| || || |||||||||||| ||| ||| ||| | || || Sbjct 63021 CGT-TCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTT 62963 Query 179355 CGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTT 179414 |||| ||| || || || |||||| | || ||||| ||||||||||||| ||| || Sbjct 62962 CGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTT 62903 Query 179415 TGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACT 179474 |||||||||||| || || | || | | || || ||||| ||||| |||||||| | Sbjct 62902 TGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTT 62843 Query 179475 CAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTAT 179534 ||||| || || |||||||| || || ||| | || || | ||| | || | || || Sbjct 62842 AAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCAT 62783 Query 179535 TCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAA 179594 |||||| | |||||||| || ||| | | ||||||||| || ||||||||||| Sbjct 62782 TCATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCG 62723 Query 179595 AGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTG 179654 ||||| || | || |||| || || || || |||||||| || || ||| | ||||| Sbjct 62722 TGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTG 62663 Query 179655 GTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTT 179714 ||| || ||||| || || | ||| ||||| |||||||| |||||||||| ||| || Sbjct 62662 GTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTT 62603 Query 179715 TGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCT 179774 ||||||||| | || |||||| | | ||||||| | | || |||||| |||| || Sbjct 62602 TGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCT-TTAAACT 62544 Query 179775 T-CGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGA 179833 | |||||||| ||||| || ||||| || | || ||||||||||| || || || | Sbjct 62543 TACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAA 62484 Query 179834 CGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTG 179893 | |||||||| || || || ||| | || ||||| | ||||||||| |||| || | Sbjct 62483 CTTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 62424 Query 179894 ATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 |||| || |||||||| | | ||||| || || || |||| |||| ||||| || Sbjct 62423 ATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 62366 Score = 358 bits (396), Expect = 8e-94 Identities = 396/525 (75%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 || || |||||||| ||| || | ||||| | || |||||||||| || ||| | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 |||||||| ||| | || | |||||| || | || ||| |||| || |||| || || Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCACC 32628 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || ||||| || |||||||| || || |||||||||| | || || ||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 |||||| |||||||| || | || |||| |||||||| ||| | || ||||| || || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| || || ||||| || ||| | || ||||||||||||| |||||| | || Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | ||| ||| | | || |||| | | || ||||| |||||||||||| | || | ||| Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 | |||||||||| || ||||| ||||| ||||| ||||| ||||| |||||| | || Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328 Query 177977 AGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTAT 178036 || || | |||| || ||||||||||||| ||||| |||| ||||||| | ||||| Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268 Query 178037 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 178081 |||||||| ||||||| |||| | ||||||||||| || || || Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 320 bits (354), Expect = 2e-82 Identities = 346/457 (76%), Gaps = 1/457 (0%) Strand=Plus/Minus Query 178080 AATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 178139 || || || |||||||| ||||| ||||| || ||||| || ||||| ||||| || | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 178140 TTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACT 178199 |||||||||||||| || || || |||||||| || | ||||| || || || | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 178200 GAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCA 178259 || || ||| | |||||||| ||||| |||||||||||||| || |||||||| ||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 178260 GCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCA 178319 || ||||| |||||||||||||| || |||||||| || || || |||||||| |||||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 178320 CTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTA 178379 | || |||||| | || || ||||| || ||||| || ||||| || || | ||| | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 178380 TCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAA 178439 || || ||||| || ||| | ||||| |||||||||||||| || | | || |||| Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 178440 GGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTC 178499 || ||||| | ||||| ||||| ||| | ||||||||||| || || |||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 178500 ATGCACGAAAGAAATAGCACATAACTTCCCGCTTGAT 178536 ||||| || | || || || ||||||||| | ||| Sbjct 30880 ATGCATGAGCGTAA-CGCTCACAACTTCCCGTTAGAT 30845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605639944976000