Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq538 116 4e-21
seq3244 104 2e-17
seq3190 89.7 5e-13
>seq538
Length=19016
Score = 116 bits (128), Expect = 4e-21
Identities = 121/159 (76%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698
|||||| |||||||| ||||||||||| ||||| || || || |||||||| ||| ||
Sbjct 16876 CAGGCATGCAAAGTCTGTGTGCAGGCCTTCGTCACGAGAAATGAGCTCGTTTGAAAAGGT 16817
Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758
||||||||||||| ||| | |||||| |||| |||| | ||| ||| || ||
Sbjct 16816 GAGGCCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAA 16757
Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797
||| | |||||||||| ||||| || | || ||||||
Sbjct 16756 GAAGATGCCCTCCACGCAAGCAAACGCAATCAGGCGCTC 16718
>seq3244
Length=4747
Score = 104 bits (114), Expect = 2e-17
Identities = 88/106 (83%), Gaps = 2/106 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| ||| ||| |||| | | | ||||| ||||||||||
Sbjct 3210 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGC 3152
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567
|||| | ||||| |||||||| ||||| ||||||||||| |||||
Sbjct 3151 CCGCAAAGATGAGACGCTGCTGATCGGGGGGGATGCCTTCTTTGTC 3106
Score = 95.1 bits (104), Expect = 1e-14
Identities = 86/106 (81%), Gaps = 2/106 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| ||| ||| |||| | | | ||||| ||||||||||
Sbjct 3662 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGC 3604
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567
| || | ||||| |||||||| ||||| |||||||| || |||||
Sbjct 3603 CGGCAAAGATGAGGCGCTGCTGATCGGGGGGGATGCCCTCTTTGTC 3558
>seq3190
Length=33988
Score = 89.7 bits (98), Expect = 5e-13
Identities = 80/98 (82%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || |||||||| ||| |||| | | | ||||| ||||||||||
Sbjct 17023 GGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCA-TCCTCAAGCTGCTTGC 16965
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559
|||| | || || ||||||||||| || |||||||||
Sbjct 16964 CCGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 16927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483399046064000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |