Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq538 116 4e-21 seq3244 104 2e-17 seq3190 89.7 5e-13 >seq538 Length=19016 Score = 116 bits (128), Expect = 4e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| ||||||||||| ||||| || || || |||||||| ||| || Sbjct 16876 CAGGCATGCAAAGTCTGTGTGCAGGCCTTCGTCACGAGAAATGAGCTCGTTTGAAAAGGT 16817 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||||||||||||| ||| | |||||| |||| |||| | ||| ||| || || Sbjct 16816 GAGGCCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAA 16757 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||| | |||||||||| ||||| || | || |||||| Sbjct 16756 GAAGATGCCCTCCACGCAAGCAAACGCAATCAGGCGCTC 16718 >seq3244 Length=4747 Score = 104 bits (114), Expect = 2e-17 Identities = 88/106 (83%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| ||| |||| | | | ||||| |||||||||| Sbjct 3210 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGC 3152 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||| | ||||| |||||||| ||||| ||||||||||| ||||| Sbjct 3151 CCGCAAAGATGAGACGCTGCTGATCGGGGGGGATGCCTTCTTTGTC 3106 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| ||| |||| | | | ||||| |||||||||| Sbjct 3662 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGC 3604 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 | || | ||||| |||||||| ||||| |||||||| || ||||| Sbjct 3603 CGGCAAAGATGAGGCGCTGCTGATCGGGGGGGATGCCCTCTTTGTC 3558 >seq3190 Length=33988 Score = 89.7 bits (98), Expect = 5e-13 Identities = 80/98 (82%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || |||||||| ||| |||| | | | ||||| |||||||||| Sbjct 17023 GGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCA-TCCTCAAGCTGCTTGC 16965 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 |||| | || || ||||||||||| || ||||||||| Sbjct 16964 CCGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCT 16927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483399046064000