Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 343 4e-90
>seq2029
Length=64692
Score = 343 bits (380), Expect = 4e-90
Identities = 350/452 (77%), Gaps = 6/452 (1%)
Strand=Plus/Minus
Query 20027 AACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTA 20086
|||||||| |||||||| ||||| ||||| || || || |||||||| ||||| ||| ||
Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241
Query 20087 TTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAG 20146
||| ||| ||||||||||| ||||| || || || || | ||||| || ||||| |
Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181
Query 20147 GAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAG 20204
||| |||| ||| | |||||||| || || ||||||||||| || || |||||||| |
Sbjct 31180 GAA--TCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTG 31123
Query 20205 CCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTT 20264
| |||||||| ||||| || ||||| || ||||||||||||||||| ||||| ||||
Sbjct 31122 CAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTT 31063
Query 20265 CTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCG 20324
| |||| |||||| | ||||| ||||| || || || |||||||| |||| || ||
Sbjct 31062 CATTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTA 31003
Query 20325 TTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACA-AC 20383
|||| || ||||| || || | || ||||||||||| ||||| || || | || ||
Sbjct 31002 TTTCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCAC 30943
Query 20384 AATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAG 20443
|| || ||||| ||| | ||||||||||||||| |||| ||||| || || || | ||
Sbjct 30942 AA-GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAA 30884
Query 20444 GTGATGCATGAACGGAATGCTCATAACTTCCC 20475
|| |||||||| || || ||||| ||||||||
Sbjct 30883 GTAATGCATGAGCGTAACGCTCACAACTTCCC 30852
Score = 259 bits (286), Expect = 1e-64
Identities = 318/432 (74%), Gaps = 2/432 (0%)
Strand=Plus/Minus
Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657
|| || || || || || || || || || ||||| || ||||| ||||| || || ||
Sbjct 32653 TTTATCATCGCTTTTATCGCAGCACCTCCTGTTGATATCGATGGTATCCGTGAGCCAGTT 32594
Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717
|| ||| ||| | || |||||||||||||| || || || | |||| | ||
Sbjct 32593 TCTGGTTCACTTTTATACGGAAACAACATCATTTCTGGTGCTATTATTCCTACTTCTAAC 32534
Query 19718 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTAC 19777
|| ||||| |||| |||||||| ||||||||||| ||| ||||| |||||| | |||
Sbjct 32533 GCAATCGGTTTACATTTCTACCCTATTTGGGAAGCAGCTTCTCTTGACGAATGGTTATAC 32474
Query 19778 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATG 19837
||||| || || | ||||||| | || | || ||| || | || |||| | ||||||||
Sbjct 32473 AACGGTGGTCCTTACCAACTTATCGTTTGTCATTTCTTCTTAGGAATCTGTTCTTACATG 32414
Query 19838 GGACGAGAGTGGGAACTTAGCTATC-GACTAGGAATGAGGCCTTGGATTTGTGTTGCCTA 19896
|| || ||||||||| ||| || || | |||| ||| | || |||||| ||||| ||
Sbjct 32413 GGTCGTGAGTGGGAA-TTATCTTTCCGTTTAGGTATGCGTCCATGGATTGCAGTTGCTTA 32355
Query 19897 CTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAG 19956
||| || || ||||| || || | || || || || ||||||| | ||||| |||
Sbjct 32354 CTCAGCACCAGTTGCTGCAGCAACAGCTGTATTCATCATCTACCCAATCGGTCAAGGTTC 32295
Query 19957 CTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCA 20016
||||| |||| ||||||||| ||||| || ||||| || |||| |||| | ||||||||
Sbjct 32294 TTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACATTTAACTTCATGATCGTATTCCA 32235
Query 20017 AGCCGAACATAA 20028
||| || |||||
Sbjct 32234 AGCTGAGCATAA 32223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148822437568800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |