Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq2029 343 4e-90 >seq2029 Length=64692 Score = 343 bits (380), Expect = 4e-90 Identities = 350/452 (77%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 20027 AACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTA 20086 |||||||| |||||||| ||||| ||||| || || || |||||||| ||||| ||| || Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 20087 TTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAG 20146 ||| ||| ||||||||||| ||||| || || || || | ||||| || ||||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 20147 GAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAG 20204 ||| |||| ||| | |||||||| || || ||||||||||| || || |||||||| | Sbjct 31180 GAA--TCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTG 31123 Query 20205 CCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTT 20264 | |||||||| ||||| || ||||| || ||||||||||||||||| ||||| |||| Sbjct 31122 CAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTT 31063 Query 20265 CTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCG 20324 | |||| |||||| | ||||| ||||| || || || |||||||| |||| || || Sbjct 31062 CATTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTA 31003 Query 20325 TTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACA-AC 20383 |||| || ||||| || || | || ||||||||||| ||||| || || | || || Sbjct 31002 TTTCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCAC 30943 Query 20384 AATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAG 20443 || || ||||| ||| | ||||||||||||||| |||| ||||| || || || | || Sbjct 30942 AA-GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAA 30884 Query 20444 GTGATGCATGAACGGAATGCTCATAACTTCCC 20475 || |||||||| || || ||||| |||||||| Sbjct 30883 GTAATGCATGAGCGTAACGCTCACAACTTCCC 30852 Score = 259 bits (286), Expect = 1e-64 Identities = 318/432 (74%), Gaps = 2/432 (0%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || || || || || || || || || || ||||| || ||||| ||||| || || || Sbjct 32653 TTTATCATCGCTTTTATCGCAGCACCTCCTGTTGATATCGATGGTATCCGTGAGCCAGTT 32594 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717 || ||| ||| | || |||||||||||||| || || || | |||| | || Sbjct 32593 TCTGGTTCACTTTTATACGGAAACAACATCATTTCTGGTGCTATTATTCCTACTTCTAAC 32534 Query 19718 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTAC 19777 || ||||| |||| |||||||| ||||||||||| ||| ||||| |||||| | ||| Sbjct 32533 GCAATCGGTTTACATTTCTACCCTATTTGGGAAGCAGCTTCTCTTGACGAATGGTTATAC 32474 Query 19778 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATG 19837 ||||| || || | ||||||| | || | || ||| || | || |||| | |||||||| Sbjct 32473 AACGGTGGTCCTTACCAACTTATCGTTTGTCATTTCTTCTTAGGAATCTGTTCTTACATG 32414 Query 19838 GGACGAGAGTGGGAACTTAGCTATC-GACTAGGAATGAGGCCTTGGATTTGTGTTGCCTA 19896 || || ||||||||| ||| || || | |||| ||| | || |||||| ||||| || Sbjct 32413 GGTCGTGAGTGGGAA-TTATCTTTCCGTTTAGGTATGCGTCCATGGATTGCAGTTGCTTA 32355 Query 19897 CTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAG 19956 ||| || || ||||| || || | || || || || ||||||| | ||||| ||| Sbjct 32354 CTCAGCACCAGTTGCTGCAGCAACAGCTGTATTCATCATCTACCCAATCGGTCAAGGTTC 32295 Query 19957 CTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCA 20016 ||||| |||| ||||||||| ||||| || ||||| || |||| |||| | |||||||| Sbjct 32294 TTTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACATTTAACTTCATGATCGTATTCCA 32235 Query 20017 AGCCGAACATAA 20028 ||| || ||||| Sbjct 32234 AGCTGAGCATAA 32223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148822437568800