Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq2029 325 1e-84 >seq2029 Length=64692 Score = 325 bits (360), Expect = 1e-84 Identities = 351/462 (76%), Gaps = 2/462 (0%) Strand=Plus/Minus Query 19246 AACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTA 19305 ||||| || |||||||| ||||| ||||| || || || ||||| || || || ||| || Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 19306 TTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAG 19365 || ||| ||||||||||| ||||| || || || || | |||||||| ||||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 19366 GTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCT 19425 | ||| ||| | || ||||| || || ||||||||||| ||||| ||||| ||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 19426 GCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCT 19485 |||||||| || || ||||| | |||||||| ||||| || || ||||| ||||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 19486 CTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTA 19545 |||||||||| || ||||||||||| || ||||| ||||||||| | || | || | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 19546 AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACA-ACAA 19604 || ||||| |||||||| ||||| || ||||| ||||| || || | || |||| Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 19605 TGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGT 19664 || ||||| ||| | ||||||||||||||| |||| ||||| ||||| || | || || Sbjct 30940 -GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGT 30882 Query 19665 AATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGC 19706 |||||| || ||||| ||||| |||||||| | ||||| || Sbjct 30881 AATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGC 30840 Score = 309 bits (342), Expect = 9e-80 Identities = 396/539 (73%), Gaps = 5/539 (1%) Strand=Plus/Minus Query 18712 CCTTGGGACTC-TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTG 18770 |||| || ||| ||||||||| ||||| || || || || |||||| | || ||||| || Sbjct 32759 CCTTTGGGCTCGTTTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTG 32700 Query 18771 GTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATT-TGTTTCATTATTGCCT 18829 |||||| | | |||||||| | | | | || ||| ||||| || || || | Sbjct 32699 GTTTGGTGTATTAATGATTCCTACTTTATTAACTGCAACTTCAGTGTTT-ATCATCGCTT 32641 Query 18830 TCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTC 18889 | || || ||||||||||| || || ||||| ||||| ||||| ||| | || ||| Sbjct 32640 TTATCGCAGCACCTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTT 32581 Query 18890 TTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTAC 18949 | || |||||||||||||| || || || | |||| | || || ||||| ||| Sbjct 32580 TATACGGAAACAACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTAC 32521 Query 18950 ACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGT 19009 | |||||||| ||||||||||| ||| ||||| |||||| | |||||||| || || | Sbjct 32520 ATTTCTACCCTATTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTT 32461 Query 19010 TCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGG 19069 ||||||| | || | || ||| || | || ||| | |||||||||| || ||||||| Sbjct 32460 ACCAACTTATCGTTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGG 32401 Query 19070 AACTTAGCTATC-GACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTT 19128 || ||| || || | |||| ||||| || |||||| ||||| |||||||| || ||| Sbjct 32400 AA-TTATCTTTCCGTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTT 32342 Query 19129 GCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCT 19188 || ||||| | || || ||| | |||| ||| | ||||||||||| || || | | Sbjct 32341 GCTGCAGCAACAGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGT 32282 Query 19189 ATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 |||||||| |||||| |||||| || |||| |||| | |||||||| ||||| ||||| Sbjct 32281 ATGCCTTTAGGTATTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141142765888800