Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3183 120 4e-21 seq622 114 2e-19 seq538 109 8e-18 seq326 105 1e-16 seq1643 98.7 1e-14 seq2434 91.5 2e-12 seq2362 91.5 2e-12 seq1467 87.8 3e-11 seq3285 86.0 9e-11 >seq3183 Length=41426 Score = 120 bits (132), Expect = 4e-21 Identities = 172/235 (73%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||||||||||||||||||| ||| | ||| |||| ||||||| Sbjct 630 ATCTTCAAGGTGCTCAAGCAGGTGCACCCCGACACC-----GGCAT-CTCCTCCAAGTCC 577 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| | |||||||| || |||| | | || || | ||||| || | Sbjct 576 ATGGCCATCCTCAACTCGTTCATCGCCGACCAGTTTGAGAAGATTGCCACCGCCGCTGCC 517 Query 725031 C-GC-CTGGCGCGCT-CCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 | || | | |||| | ||| |||| || | || || | || ||||||||||||||| Sbjct 516 CAGCTCAGCCGCGTTAACAAGAAGCCCACCCTGA-CG--TCTCGGGAGATCCAGACCGCC 460 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||| | ||| |||||| ||||||| ||||||||| ||||||||||| Sbjct 459 GTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTAAGCGAGGGCACCA 405 >seq622 Length=11311 Score = 114 bits (126), Expect = 2e-19 Identities = 171/235 (73%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||||||||| ||||||||| ||| | ||| |||| ||||||| Sbjct 444 ATCTTCAAGGTGCTCAAGCAAGTGCACCCCGACACC-----GGCAT-CTCCTCCAAGTCC 497 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| | |||||||| || |||| | | || || | ||||| || | Sbjct 498 ATGGCAATCCTCAACTCGTTCATCGCCGACCAGTTTGAGAAGATTGCCACCGCCGCTGCC 557 Query 725031 C-GC-CTGGCGCG-CTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 | || | | |||| | ||| |||| || | || || | || |||||||||||||| Sbjct 558 CAGCTCAGCCGCGTCAACAAGAAGCCCACCCTGA-CG--TCTCGGGAGATCCAGACCGCT 614 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||||| | ||| |||||| ||||||| |||||||||| ||||||||||| Sbjct 615 GTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCAGCGAGGGCACCA 669 >seq538 Length=19016 Score = 109 bits (120), Expect = 8e-18 Identities = 141/190 (74%), Gaps = 11/190 (6%) Strand=Plus/Plus Query 1455980 AGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTA-- 1456037 |||| ||| || ||||| |||||||| ||||| || ||||||||||| || | || Sbjct 16325 AGGCCCGTGCCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCCGAGATGTACA 16384 Query 1456038 -CTCGCTCCTGATCGACACCTACGTCAAGGAC--CCGGTCGAGAAGGACCACCTCTTTCG 1456094 || ||| ||| || || ||| |||||||| || | |||||||| | || |||| Sbjct 16385 GCTTGCTTCTG---GAGACGTACATCAAGGACAGCCAG--GAGAAGGAGAAGCTGTTTCA 16439 Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 |||||| || |||||||| |||| | || ||||| ||||||| ||||||||||| | Sbjct 16440 CGCCATGGAGACGGTGCCTGTGGTGCGCAAGAAGGCGCACTGGGCAATGAAGTGGATTGA 16499 Query 1456155 CAAGGAGGGC 1456164 | ||| |||| Sbjct 16500 C-AGGTGGGC 16508 Score = 98.7 bits (108), Expect = 1e-14 Identities = 135/185 (73%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 ||||| || | |||||||| |||||| || | || ||||||| |||| | |||||| Sbjct 17119 GAGGCGGTTGCCATCGAGAAGGAGTTTATCTGTGACGCGCTGCCCGTGGATTTGATCGGC 17178 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 |||||| ||| ||| | ||||||||||| || ||| || ||||| ||||| | || Sbjct 17179 ATGAAC-AAGGTGCTGATGGGGCAGTACATTGAGTTCTGT-GCGGACCGGCTGCTAGTGG 17236 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 |||| ||| | ||||| ||| | ||||||||| || |||||||| ||||| Sbjct 17237 CGCTGGGCAAC-CCCAAGCAGTACAACATGGCCAACCCCTTTGACTGGATGGACATGATC 17295 Query 1456712 TCGCT 1456716 ||||| Sbjct 17296 TCGCT 17300 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/112 (79%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 1456200 GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCG 1456259 |||| ||||||||||| ||||| ||| |||||| ||||||| |||||||||||||| | Sbjct 16740 GCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGAG 16799 Query 1456260 GCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 | ||||||||||| | || |||| ||||| | || ||| ||||||| Sbjct 16800 GGCTCATGCCCGG-CCTCACCTTTTCAAACGAGCTCATTTCTCGTGACGAAG 16850 >seq326 Length=80286 Score = 105 bits (116), Expect = 1e-16 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 260006 GGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGT 260065 ||||||||||| ||||||||| |||| || || |||||| | ||||||||||| || Sbjct 59864 GGCATCTATGATACGCTCAAGGAGTGTGCAGGTATTTCCAAGTCTGCCGGCGGCATTGGC 59805 Query 260066 TTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCC 260125 | | ||||| | |||||| | ||| | ||| | ||||| |||||| ||| Sbjct 59804 CTGTCAATGCACAACATTCGCGCCACCGGCTCGTACATCCGCGGCACTAACGGCACATCC 59745 Query 260126 AACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACAC 260163 |||||| | ||||||||||| ||||| ||||| ||||| Sbjct 59744 AACGGCATCGTGCCCATGCTGCGCGTGTTTAATGACAC 59707 >seq1643 Length=669 Score = 98.7 bits (108), Expect = 1e-14 Identities = 157/218 (72%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||||||||||||||||||| ||| | ||| |||| ||||||| Sbjct 461 ATCTTCAAGGTGCTCAAGCAGGTGCACCCCGACACC-----GGCAT-CTCCTCCAAGTCC 514 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||| | |||||||| || |||| | | || || | ||||| || | Sbjct 515 ATGGCCATCCTCAACTCGTTCATCGCCGACCAGTTTGAGAAGATTGCCACCGCCGCTGCC 574 Query 725031 C-GC-CTGGCGCG-CTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 | || | | |||| | ||| |||| || | || || | || |||||||||||||| Sbjct 575 CAGCTCAGCCGCGTCAACAAGAAGCCCACCCTGA-CG--TCCCGGGAGATCCAGACCGCT 631 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGC 725125 ||||||||| | ||| |||||| ||||||| |||||| Sbjct 632 GTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGC 669 >seq2434 Length=50316 Score = 91.5 bits (100), Expect = 2e-12 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 333010 GTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGA 333069 ||| ||||| || ||||| | ||||| || ||||| ||||||| ||| | | | Sbjct 14325 GTCTGCCTCATCCAGGATCACAATCTTCTGTCGCCCCGGCGGCAGCGTCACCTTCTGCTG 14266 Query 333070 GGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAG 333129 || ||||| | ||||||||||| || | |||||| ||||| ||||| || || Sbjct 14265 CGCAAACATCTTGATCTTGTTGCGCACGACATCAATGCCGCGGTCGTCAGACGCATTCAG 14206 Query 333130 TTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAG-AGGACGCGCGCCAGGCACGCGATGC 333188 || ||||| |||| ||| || | ||| || || || | ||||||||| |||| Sbjct 14205 CTCCAGCACACCCTC-CCGGAAGCTGGGCCCCAGCAGCTCGTGGGCCAGGCACAGAATGC 14147 Query 333189 TCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 | ||||||||||| ||||| || || ||| Sbjct 14146 TGGTGGTCTTGCCGGTGCCTGGGGGGCCC 14118 >seq2362 Length=5612 Score = 91.5 bits (100), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || |||||||||||||||||||||||| | ||| |||||| ||||||| |||||||||| Sbjct 25 CGGGAGATCCAGACCGCCGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTC 84 Query 725130 TCCGAGGGCACCA 725142 ||||||||||| Sbjct 85 AGCGAGGGCACCA 97 >seq1467 Length=668 Score = 87.8 bits (96), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || |||||||||||||||||||||||| | ||| |||||| ||||||| ||| |||||| Sbjct 7 CGGGAGATCCAGACCGCCGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCATGCCGTC 66 Query 725130 TCCGAGGGCACCA 725142 ||||||||||| Sbjct 67 AGCGAGGGCACCA 79 >seq3285 Length=63365 Score = 86.0 bits (94), Expect = 9e-11 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 1456066 GACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 ||||| || || |||| ||||| | ||| | ||||| | || | || ||| Sbjct 18665 GACCCAGTGCAGCGGGACATGCTCTTCCACGCGGTGGACACCATTCCCTGCGTACAGAAG 18724 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 ||||| | ||||||||||||||||| | || || || |||||| ||||||| Sbjct 18725 AAGGCGCAGTGGGCGATGAAGTGGAT-AGAGAGCAGCAGCT----GCTTTGCAGAGCGGC 18779 Query 1456186 TCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 | |||| || || | || ||||||||| ||||| ||| ||||||| | ||||| | Sbjct 18780 TTGTCGCCTACGCGTGTGTGGAGGGCATCCACTTCTCTGGCTCTTTCTGCTCGATCTTCT 18839 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 |||| |||||||| |||||||| ||| Sbjct 18840 GGCTGAAGAAGCGGCAGCTCATGCCTGGT 18868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177463973383200