Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq3183 120 4e-21
seq622 114 2e-19
seq538 109 8e-18
seq326 105 1e-16
seq1643 98.7 1e-14
seq2434 91.5 2e-12
seq2362 91.5 2e-12
seq1467 87.8 3e-11
seq3285 86.0 9e-11
>seq3183
Length=41426
Score = 120 bits (132), Expect = 4e-21
Identities = 172/235 (73%), Gaps = 12/235 (5%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| ||||||||||||||||||||||||| ||| | ||| |||| |||||||
Sbjct 630 ATCTTCAAGGTGCTCAAGCAGGTGCACCCCGACACC-----GGCAT-CTCCTCCAAGTCC 577
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| | ||| | |||||||| || |||| | | || || | ||||| || |
Sbjct 576 ATGGCCATCCTCAACTCGTTCATCGCCGACCAGTTTGAGAAGATTGCCACCGCCGCTGCC 517
Query 725031 C-GC-CTGGCGCGCT-CCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087
| || | | |||| | ||| |||| || | || || | || |||||||||||||||
Sbjct 516 CAGCTCAGCCGCGTTAACAAGAAGCCCACCCTGA-CG--TCTCGGGAGATCCAGACCGCC 460
Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||||||| | ||| |||||| ||||||| ||||||||| |||||||||||
Sbjct 459 GTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTAAGCGAGGGCACCA 405
>seq622
Length=11311
Score = 114 bits (126), Expect = 2e-19
Identities = 171/235 (73%), Gaps = 12/235 (5%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| ||||||||||||||| ||||||||| ||| | ||| |||| |||||||
Sbjct 444 ATCTTCAAGGTGCTCAAGCAAGTGCACCCCGACACC-----GGCAT-CTCCTCCAAGTCC 497
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| | ||| | |||||||| || |||| | | || || | ||||| || |
Sbjct 498 ATGGCAATCCTCAACTCGTTCATCGCCGACCAGTTTGAGAAGATTGCCACCGCCGCTGCC 557
Query 725031 C-GC-CTGGCGCG-CTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087
| || | | |||| | ||| |||| || | || || | || ||||||||||||||
Sbjct 558 CAGCTCAGCCGCGTCAACAAGAAGCCCACCCTGA-CG--TCTCGGGAGATCCAGACCGCT 614
Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||||||| | ||| |||||| ||||||| |||||||||| |||||||||||
Sbjct 615 GTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCAGCGAGGGCACCA 669
>seq538
Length=19016
Score = 109 bits (120), Expect = 8e-18
Identities = 141/190 (74%), Gaps = 11/190 (6%)
Strand=Plus/Plus
Query 1455980 AGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTA-- 1456037
|||| ||| || ||||| |||||||| ||||| || ||||||||||| || | ||
Sbjct 16325 AGGCCCGTGCCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCCGAGATGTACA 16384
Query 1456038 -CTCGCTCCTGATCGACACCTACGTCAAGGAC--CCGGTCGAGAAGGACCACCTCTTTCG 1456094
|| ||| ||| || || ||| |||||||| || | |||||||| | || ||||
Sbjct 16385 GCTTGCTTCTG---GAGACGTACATCAAGGACAGCCAG--GAGAAGGAGAAGCTGTTTCA 16439
Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154
|||||| || |||||||| |||| | || ||||| ||||||| ||||||||||| |
Sbjct 16440 CGCCATGGAGACGGTGCCTGTGGTGCGCAAGAAGGCGCACTGGGCAATGAAGTGGATTGA 16499
Query 1456155 CAAGGAGGGC 1456164
| ||| ||||
Sbjct 16500 C-AGGTGGGC 16508
Score = 98.7 bits (108), Expect = 1e-14
Identities = 135/185 (73%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591
||||| || | |||||||| |||||| || | || ||||||| |||| | ||||||
Sbjct 17119 GAGGCGGTTGCCATCGAGAAGGAGTTTATCTGTGACGCGCTGCCCGTGGATTTGATCGGC 17178
Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651
|||||| ||| ||| | ||||||||||| || ||| || ||||| ||||| | ||
Sbjct 17179 ATGAAC-AAGGTGCTGATGGGGCAGTACATTGAGTTCTGT-GCGGACCGGCTGCTAGTGG 17236
Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711
|||| ||| | ||||| ||| | ||||||||| || |||||||| |||||
Sbjct 17237 CGCTGGGCAAC-CCCAAGCAGTACAACATGGCCAACCCCTTTGACTGGATGGACATGATC 17295
Query 1456712 TCGCT 1456716
|||||
Sbjct 17296 TCGCT 17300
Score = 91.5 bits (100), Expect = 2e-12
Identities = 88/112 (79%), Gaps = 1/112 (1%)
Strand=Plus/Plus
Query 1456200 GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCG 1456259
|||| ||||||||||| ||||| ||| |||||| ||||||| |||||||||||||| |
Sbjct 16740 GCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGAG 16799
Query 1456260 GCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311
| ||||||||||| | || |||| ||||| | || ||| |||||||
Sbjct 16800 GGCTCATGCCCGG-CCTCACCTTTTCAAACGAGCTCATTTCTCGTGACGAAG 16850
>seq326
Length=80286
Score = 105 bits (116), Expect = 1e-16
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 260006 GGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGT 260065
||||||||||| ||||||||| |||| || || |||||| | ||||||||||| ||
Sbjct 59864 GGCATCTATGATACGCTCAAGGAGTGTGCAGGTATTTCCAAGTCTGCCGGCGGCATTGGC 59805
Query 260066 TTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCC 260125
| | ||||| | |||||| | ||| | ||| | ||||| |||||| |||
Sbjct 59804 CTGTCAATGCACAACATTCGCGCCACCGGCTCGTACATCCGCGGCACTAACGGCACATCC 59745
Query 260126 AACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACAC 260163
|||||| | ||||||||||| ||||| ||||| |||||
Sbjct 59744 AACGGCATCGTGCCCATGCTGCGCGTGTTTAATGACAC 59707
>seq1643
Length=669
Score = 98.7 bits (108), Expect = 1e-14
Identities = 157/218 (72%), Gaps = 12/218 (6%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| ||||||||||||||||||||||||| ||| | ||| |||| |||||||
Sbjct 461 ATCTTCAAGGTGCTCAAGCAGGTGCACCCCGACACC-----GGCAT-CTCCTCCAAGTCC 514
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| | ||| | |||||||| || |||| | | || || | ||||| || |
Sbjct 515 ATGGCCATCCTCAACTCGTTCATCGCCGACCAGTTTGAGAAGATTGCCACCGCCGCTGCC 574
Query 725031 C-GC-CTGGCGCG-CTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087
| || | | |||| | ||| |||| || | || || | || ||||||||||||||
Sbjct 575 CAGCTCAGCCGCGTCAACAAGAAGCCCACCCTGA-CG--TCCCGGGAGATCCAGACCGCT 631
Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGC 725125
||||||||| | ||| |||||| ||||||| ||||||
Sbjct 632 GTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGC 669
>seq2434
Length=50316
Score = 91.5 bits (100), Expect = 2e-12
Identities = 147/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 333010 GTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGA 333069
||| ||||| || ||||| | ||||| || ||||| ||||||| ||| | | |
Sbjct 14325 GTCTGCCTCATCCAGGATCACAATCTTCTGTCGCCCCGGCGGCAGCGTCACCTTCTGCTG 14266
Query 333070 GGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAG 333129
|| ||||| | ||||||||||| || | |||||| ||||| ||||| || ||
Sbjct 14265 CGCAAACATCTTGATCTTGTTGCGCACGACATCAATGCCGCGGTCGTCAGACGCATTCAG 14206
Query 333130 TTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAG-AGGACGCGCGCCAGGCACGCGATGC 333188
|| ||||| |||| ||| || | ||| || || || | ||||||||| ||||
Sbjct 14205 CTCCAGCACACCCTC-CCGGAAGCTGGGCCCCAGCAGCTCGTGGGCCAGGCACAGAATGC 14147
Query 333189 TCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217
| ||||||||||| ||||| || || |||
Sbjct 14146 TGGTGGTCTTGCCGGTGCCTGGGGGGCCC 14118
>seq2362
Length=5612
Score = 91.5 bits (100), Expect = 2e-12
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129
|| |||||||||||||||||||||||| | ||| |||||| ||||||| ||||||||||
Sbjct 25 CGGGAGATCCAGACCGCCGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTC 84
Query 725130 TCCGAGGGCACCA 725142
|||||||||||
Sbjct 85 AGCGAGGGCACCA 97
>seq1467
Length=668
Score = 87.8 bits (96), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129
|| |||||||||||||||||||||||| | ||| |||||| ||||||| ||| ||||||
Sbjct 7 CGGGAGATCCAGACCGCCGTGCGCCTGGTGCTGCCCGGCGAGCTGGCCAAGCATGCCGTC 66
Query 725130 TCCGAGGGCACCA 725142
|||||||||||
Sbjct 67 AGCGAGGGCACCA 79
>seq3285
Length=63365
Score = 86.0 bits (94), Expect = 9e-11
Identities = 146/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 1456066 GACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125
||||| || || |||| ||||| | ||| | ||||| | || | || |||
Sbjct 18665 GACCCAGTGCAGCGGGACATGCTCTTCCACGCGGTGGACACCATTCCCTGCGTACAGAAG 18724
Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185
||||| | ||||||||||||||||| | || || || |||||| |||||||
Sbjct 18725 AAGGCGCAGTGGGCGATGAAGTGGAT-AGAGAGCAGCAGCT----GCTTTGCAGAGCGGC 18779
Query 1456186 TCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244
| |||| || || | || ||||||||| ||||| ||| ||||||| | ||||| |
Sbjct 18780 TTGTCGCCTACGCGTGTGTGGAGGGCATCCACTTCTCTGGCTCTTTCTGCTCGATCTTCT 18839
Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273
|||| |||||||| |||||||| |||
Sbjct 18840 GGCTGAAGAAGCGGCAGCTCATGCCTGGT 18868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177463973383200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |