Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2029 527 9e-145 >seq2029 Length=64692 Score = 527 bits (584), Expect = 9e-145 Identities = 730/1014 (72%), Gaps = 6/1014 (1%) Strand=Plus/Minus Query 175850 GTATGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGG 175909 || |||| || | || |||||||||| | || | || | ||| | || ||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 175910 ATTACTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTT 175968 ||||| || ||||| ||||| |||||||| |||| || ||| |||| || || || | Sbjct 63319 GTTACTT-TTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACAT 63261 Query 175969 TTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTC 176028 |||| || |||||| || |||||| | ||| |||| ||| | || || ||| || Sbjct 63260 TTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAATTTCT 63201 Query 176029 TCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGG 176088 | || || || || || ||||| || || ||||||||||||| | | | ||||||| Sbjct 63200 TAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGGG 63141 Query 176089 GTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTG 176148 | || ||| |||| || || || || ||| |||||||||||| |||||| | || | Sbjct 63140 GCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTCG 63081 Query 176149 TTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAA 176208 | || || |||||| | || | |||||||| || ||||||||||| |||||| | || Sbjct 63080 TAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCTC 63021 Query 176209 GACTCATTGGTA-TCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTT 176267 | ||| | | | ||||| || ||||| ||||| || || ||| || |||| || Sbjct 63020 GT-TCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTTC 62962 Query 176268 GTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTT 176327 || |||||| || | |||||| |||||||||| ||||||||||| || ||| Sbjct 62961 GTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTTT 62902 Query 176328 GGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTG 176387 ||||| || ||||| || | || | || ||| |||| || ||||| |||||||| | Sbjct 62901 GGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTTA 62842 Query 176388 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATC 176447 ||||| |||||||||||||| || |||||| ||||||| | || |||| | || || Sbjct 62841 AACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCATT 62782 Query 176448 CATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACT 176507 ||||| | |||||| ||||| || || | ||||||||| || ||||| ||| | Sbjct 62781 CATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCGT 62722 Query 176508 GCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGG 176567 ||||| | | || || | ||||| || || || ||||| ||||| ||| | || ||| Sbjct 62721 GCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTGG 62662 Query 176568 TCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTT 176627 || |||||||| || || || ||| |||||| |||||| | |||||||||||| | ||| Sbjct 62661 TCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTTT 62602 Query 176628 GTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTT 176687 || ||||| | || |||||| | |||||| | | || || ||| |||| ||| Sbjct 62601 GTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCT-TTAAACTT 62543 Query 176688 -CGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAAC 176746 |||||||| ||||| || ||||| ||| | || ||||||||||| || |||||||| Sbjct 62542 ACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAAC 62483 Query 176747 TTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGA 176806 |||||| || || || |||||| | |||||||| | | || |||||||| || || Sbjct 62482 TTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 62423 Query 176807 TCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||| || ||||| | |||||||||| || || ||| |||| | || ||||| Sbjct 62422 TCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGC 62369 Score = 399 bits (442), Expect = 3e-106 Identities = 365/461 (79%), Gaps = 0/461 (0%) Strand=Plus/Minus Query 174990 AACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTG 175049 ||||| | |||||||| ||||| ||| | || || || ||||| || ||||||||||| Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 175050 TTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACT 175109 ||||| || ||||| ||||||||||| || ||||| || | ||||| |||||||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 175110 GAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCA 175169 || ||| ||| | |||||||| ||||| ||||||||||| || || |||||||| ||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 175170 GCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCA 175229 || |||||||||||||||||||| || |||||||||||||| || |||||||| || ||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 175230 CTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTT 175289 | || ||||||||||| || ||||||||||| ||||| ||||| || || | ||| || Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 175290 TCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAA 175349 || || ||||| |||||| | |||||||||||||||||||| || ||| | || |||| Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 175350 GGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTA 175409 || | || | ||||| ||||| || || | ||| | || ||||| ||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 175410 ATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 ||||||||| | || || ||||||||||| ||||||| || Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGC 30840 Score = 398 bits (440), Expect = 1e-105 Identities = 410/534 (77%), Gaps = 2/534 (0%) Strand=Plus/Minus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 |||| || |||||| ||||| || || | || ||| | ||| |||||||||| Sbjct 32755 TGGGCTCGTTTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTT 32696 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTA-TGTTTCATTATCGCTTTCGT 174577 ||||| ||||||||||||| || ||| | |||||| | ||||| || |||||||| | Sbjct 32695 GGTGTATTAATGATTCCTACTTTATTAACTGCAACTTCAGTGTTT-ATCATCGCTTTTAT 32637 Query 174578 GGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTA 174637 | || || || || || ||||| || |||||||| ||||| |||||||||| | || Sbjct 32636 CGCAGCACCTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATA 32577 Query 174638 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTT 174697 |||||||||||||| |||||||| || |||||| ||| |||||||||||| |||| || Sbjct 32576 CGGAAACAACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTT 32517 Query 174698 CTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCA 174757 |||||| || ||||||||||| | || ||||||||| | |||||||||||||||| ||| Sbjct 32516 CTACCCTATTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCA 32457 Query 174758 ACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACT 174817 ||| | || | || ||| | | || |||| | || ||||| |||||||||||| | Sbjct 32456 ACTTATCGTTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATT 32397 Query 174818 CTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGC 174877 |||| |||||||||||| | || ||||| || || ||||| ||||||||||| || Sbjct 32396 ATCTTTCCGTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGC 32337 Query 174878 AGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCC 174937 ||| |||| |||||| | |||| || ||||||||||||| ||||| || | ||||| Sbjct 32336 AGCAACAGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCC 32277 Query 174938 CTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAA 174991 || ||||| ||||| ||||| |||| |||| | || |||||||| || ||||| Sbjct 32276 TTTAGGTATTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729896753168000