Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq2029 540 1e-148 >seq2029 Length=64692 Score = 540 bits (598), Expect = 1e-148 Identities = 739/1023 (72%), Gaps = 8/1023 (1%) Strand=Plus/Minus Query 159898 GTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGG 159957 |||||| | | || ||||||||| || || |||||||||||||| || ||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 159958 ACTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTT 160016 | ||| || ||||| ||||| |||||||| |||| |||||| |||| ||||| || | Sbjct 63319 GTTACTT-TTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACAT 63261 Query 160017 TCGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTT 160075 | | ||| |||||||| ||||| | |||| ||| ||| | || || || || ||| Sbjct 63260 TTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA--TTT 63203 Query 160076 CTTA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTG 160134 |||| | || | ||| |||||||| | ||||||||||||| | | |||| || Sbjct 63202 CTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTG 63143 Query 160135 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTT 160194 ||| || || |||||||| ||||| | ||| ||||||||| || || |||| ||| Sbjct 63142 GGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTT 63083 Query 160195 TGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGC 160254 || || || || ||| | || | || ||||| || ||||| ||||| |||||| | || Sbjct 63082 CGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGC 63023 Query 160255 ACGTCTCA-TCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCT 160313 ||| ||| | || ||||| || || || ||||| || |||| ||| ||| |||| | Sbjct 63022 TCGT-TCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTT 62964 Query 160314 TTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCT 160373 | || || ||||| || |||||||| ||||| || ||||||| || || || | Sbjct 62963 TCGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTT 62904 Query 160374 TTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGC 160433 |||| || || ||||| || | || | || || ||||||| || || |||||||| Sbjct 62903 TTGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTT 62844 Query 160434 TTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCA 160493 | ||||| |||||||||||||| || |||||| ||||||||| || | || | |||| Sbjct 62843 TAAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCA 62784 Query 160494 TCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTA 160553 | ||||| | ||||||||| |||||||| | ||||||||| || ||||| || || Sbjct 62783 TTCATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCC 62724 Query 160554 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 160613 |||||| | | || || | |||||| || || |||||||| ||||| ||| | || | Sbjct 62723 GTGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTT 62664 Query 160614 GGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 160673 |||| || ||||| ||| | || |||||||| || || ||| | || || || ||| | | Sbjct 62663 GGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTT 62604 Query 160674 TTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATC 160733 |||| ||||| | || ||||||| |||||| | | ||||| ||| | || Sbjct 62603 TTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCTTTAAACT 62544 Query 160734 TTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGA 160793 | ||||||||||||||||| ||||| ||| | || |||||||||||||||||||| | Sbjct 62543 TACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAA 62484 Query 160794 CCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCG 160853 | ||||| ||||| || ||||| | || ||||| | ||||| ||| | || || | Sbjct 62483 CTTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 62424 Query 160854 ACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTT 160913 | || || ||||| || || | ||||| || || ||| | || | || ||||| |||| Sbjct 62423 ATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTT 62364 Query 160914 AAT 160916 ||| Sbjct 62363 AAT 62361 Score = 378 bits (418), Expect = 8e-100 Identities = 401/526 (76%), Gaps = 2/526 (0%) Strand=Plus/Minus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 ||| || |||||||| ||| || | ||||| | || |||||||||| || ||| | Sbjct 32747 TTTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 32688 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 |||||||| ||| | || | ||||| || || || ||| |||| || |||| || | Sbjct 32687 AATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCAC 32629 Query 158497 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 158556 | ||||| || ||||| || |||||||| || || |||||||||| | || || |||| Sbjct 32628 CTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACA 32569 Query 158557 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 158616 ||||||| |||||||| || | || |||| |||||||| ||| | || ||||| || | Sbjct 32568 ACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTA 32509 Query 158617 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 158676 | |||||||| || || ||||| || ||| | || ||||||||||||| |||||| | | Sbjct 32508 TTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCG 32449 Query 158677 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACC 158736 | | ||| ||| | | || |||| | | || ||||| ||||| |||||| | || | || Sbjct 32448 TTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 32389 Query 158737 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTG 158796 | ||||||||||| || ||||| || || || || |||||||| ||||||||| | | Sbjct 32388 GTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAG 32329 Query 158797 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158856 |||||||| || |||| || ||||||||||||||||||| |||| ||||||| | |||| Sbjct 32328 CTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 32269 Query 158857 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 158902 | |||||||| ||||||| |||| | ||||||||||| || || || Sbjct 32268 TTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 372 bits (412), Expect = 3e-98 Identities = 352/449 (78%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 158901 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158960 ||||| || |||||||| ||||||||||| || ||||| || ||||| ||||| || | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 158961 TTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACA 159020 |||||||||||||| || || || ||||| || || |||||||||| ||||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 159021 GAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCA 159080 || ||| ||| | |||||||| ||||| |||||||||||||| || || ||||| ||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 159081 GCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCC 159140 || ||||| |||||||||||||| || |||||||||||||| || |||||||| ||||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 159141 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTG 159200 || || |||||| | ||||| ||||| ||||| || || ||||| || || | || | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 159201 TCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 159260 ||||| ||||| |||||| | || ||||||||||||||||| || | | ||| || Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 159261 GGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTT 159320 || ||||| | ||||| ||||| || | | |||||||| || ||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 159321 ATGCATGAGCGTAACGCACACAACTTCCC 159349 ||||||||||||||||| ||||||||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552448738688000