Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_027130.1
Length=172688
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 540 1e-148
>seq2029
Length=64692
Score = 540 bits (598), Expect = 1e-148
Identities = 739/1023 (72%), Gaps = 8/1023 (1%)
Strand=Plus/Minus
Query 159898 GTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGG 159957
|||||| | | || ||||||||| || || |||||||||||||| || ||||| ||
Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320
Query 159958 ACTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTT 160016
| ||| || ||||| ||||| |||||||| |||| |||||| |||| ||||| || |
Sbjct 63319 GTTACTT-TTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACAT 63261
Query 160017 TCGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTT 160075
| | ||| |||||||| ||||| | |||| ||| ||| | || || || || |||
Sbjct 63260 TTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA--TTT 63203
Query 160076 CTTA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTG 160134
|||| | || | ||| |||||||| | ||||||||||||| | | |||| ||
Sbjct 63202 CTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTG 63143
Query 160135 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTT 160194
||| || || |||||||| ||||| | ||| ||||||||| || || |||| |||
Sbjct 63142 GGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTT 63083
Query 160195 TGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGC 160254
|| || || || ||| | || | || ||||| || ||||| ||||| |||||| | ||
Sbjct 63082 CGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGC 63023
Query 160255 ACGTCTCA-TCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCT 160313
||| ||| | || ||||| || || || ||||| || |||| ||| ||| |||| |
Sbjct 63022 TCGT-TCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTT 62964
Query 160314 TTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCT 160373
| || || ||||| || |||||||| ||||| || ||||||| || || || |
Sbjct 62963 TCGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTT 62904
Query 160374 TTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGC 160433
|||| || || ||||| || | || | || || ||||||| || || ||||||||
Sbjct 62903 TTGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTT 62844
Query 160434 TTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCA 160493
| ||||| |||||||||||||| || |||||| ||||||||| || | || | ||||
Sbjct 62843 TAAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCA 62784
Query 160494 TCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTA 160553
| ||||| | ||||||||| |||||||| | ||||||||| || ||||| || ||
Sbjct 62783 TTCATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCC 62724
Query 160554 AGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 160613
|||||| | | || || | |||||| || || |||||||| ||||| ||| | || |
Sbjct 62723 GTGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTT 62664
Query 160614 GGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGT 160673
|||| || ||||| ||| | || |||||||| || || ||| | || || || ||| | |
Sbjct 62663 GGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTT 62604
Query 160674 TTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATC 160733
|||| ||||| | || ||||||| |||||| | | ||||| ||| | ||
Sbjct 62603 TTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCTTTAAACT 62544
Query 160734 TTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGA 160793
| ||||||||||||||||| ||||| ||| | || |||||||||||||||||||| |
Sbjct 62543 TACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAA 62484
Query 160794 CCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCG 160853
| ||||| ||||| || ||||| | || ||||| | ||||| ||| | || || |
Sbjct 62483 CTTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 62424
Query 160854 ACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTT 160913
| || || ||||| || || | ||||| || || ||| | || | || ||||| ||||
Sbjct 62423 ATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTT 62364
Query 160914 AAT 160916
|||
Sbjct 62363 AAT 62361
Score = 378 bits (418), Expect = 8e-100
Identities = 401/526 (76%), Gaps = 2/526 (0%)
Strand=Plus/Minus
Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437
||| || |||||||| ||| || | ||||| | || |||||||||| || ||| |
Sbjct 32747 TTTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 32688
Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496
|||||||| ||| | || | ||||| || || || ||| |||| || |||| || |
Sbjct 32687 AATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCAC 32629
Query 158497 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 158556
| ||||| || ||||| || |||||||| || || |||||||||| | || || ||||
Sbjct 32628 CTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACA 32569
Query 158557 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 158616
||||||| |||||||| || | || |||| |||||||| ||| | || ||||| || |
Sbjct 32568 ACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTA 32509
Query 158617 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 158676
| |||||||| || || ||||| || ||| | || ||||||||||||| |||||| | |
Sbjct 32508 TTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCG 32449
Query 158677 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACC 158736
| | ||| ||| | | || |||| | | || ||||| ||||| |||||| | || | ||
Sbjct 32448 TTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 32389
Query 158737 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTG 158796
| ||||||||||| || ||||| || || || || |||||||| ||||||||| | |
Sbjct 32388 GTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAG 32329
Query 158797 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158856
|||||||| || |||| || ||||||||||||||||||| |||| ||||||| | ||||
Sbjct 32328 CTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 32269
Query 158857 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 158902
| |||||||| ||||||| |||| | ||||||||||| || || ||
Sbjct 32268 TTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223
Score = 372 bits (412), Expect = 3e-98
Identities = 352/449 (78%), Gaps = 0/449 (0%)
Strand=Plus/Minus
Query 158901 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158960
||||| || |||||||| ||||||||||| || ||||| || ||||| ||||| || |
Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241
Query 158961 TTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACA 159020
|||||||||||||| || || || ||||| || || |||||||||| ||||| |
Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181
Query 159021 GAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCA 159080
|| ||| ||| | |||||||| ||||| |||||||||||||| || || ||||| |||
Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121
Query 159081 GCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCC 159140
|| ||||| |||||||||||||| || |||||||||||||| || |||||||| |||||
Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061
Query 159141 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTG 159200
|| || |||||| | ||||| ||||| ||||| || || ||||| || || | || |
Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001
Query 159201 TCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 159260
||||| ||||| |||||| | || ||||||||||||||||| || | | ||| ||
Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941
Query 159261 GGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTT 159320
|| ||||| | ||||| ||||| || | | |||||||| || |||||||||||
Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881
Query 159321 ATGCATGAGCGTAACGCACACAACTTCCC 159349
||||||||||||||||| |||||||||||
Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552448738688000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |