Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq2029 542 3e-149 >seq2029 Length=64692 Score = 542 bits (600), Expect = 3e-149 Identities = 731/1013 (72%), Gaps = 4/1013 (0%) Strand=Plus/Minus Query 180020 GTTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGG 180079 ||| ||||| | || ||||||||| |||||||| || || ||||| || ||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 180080 ACTACTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTT 180138 |||| || ||||| ||||| |||||||| |||| |||||| |||| || || | | Sbjct 63319 GTTACTT-TTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACAT 63261 Query 180139 TTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTC 180198 |||| || |||||| || || ||| | ||| |||| ||| | ||||| ||| |||| Sbjct 63260 TTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA-TTTC 63202 Query 180199 TTA-CGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 180257 ||| | || || || || || || || | ||||||||||||| | | | |||||| Sbjct 63201 TTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGG 63142 Query 180258 GGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTC 180317 || || || |||| || |||| || |||||||||||||| || || |||| |||| Sbjct 63141 GGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTC 63082 Query 180318 GTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCA 180377 || || || |||||| | || | || ||||| |||||||| || || |||||| | || Sbjct 63081 GTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCT 63022 Query 180378 CGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTT 180437 ||| | || ||||| || || || ||||| || |||| ||| || |||| || Sbjct 63021 CGTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTTC 62962 Query 180438 GTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTT 180497 || || || || || |||||| | ||||| || ||||||||||||| || |||| Sbjct 62961 GTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTTT 62902 Query 180498 GGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTC 180557 || || || ||||| || | || | | ||| |||| || ||||| |||||||| | Sbjct 62901 GGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTTA 62842 Query 180558 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATC 180617 ||||| |||||||||||||| || |||||| ||||||| | || || || | || || Sbjct 62841 AACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCATT 62782 Query 180618 CATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAG 180677 ||||| | ||||| || |||||||| | ||||||||| || |||||||| || Sbjct 62781 CATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCGT 62722 Query 180678 GCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGG 180737 || ||| | |||| |||| || ||||| ||||||||||| ||||| ||| | || ||| Sbjct 62721 GCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTGG 62662 Query 180738 TCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 180797 || || ||||| ||| | || |||||||| || || ||| | || || || ||| | ||| Sbjct 62661 TCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTTT 62602 Query 180798 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTT 180857 || ||||| | || || |||| ||||||| | | ||||| ||| | ||| | Sbjct 62601 GTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCTTTAAACTTA 62542 Query 180858 CGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACG 180917 ||||||||||||||||| ||||| || | || ||||||||||| || || || || Sbjct 62541 CGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAACT 62482 Query 180918 TTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGAT 180977 ||||| ||||| || ||||| || || ||||| | ||||| ||| |||| || ||| Sbjct 62481 TTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGAT 62422 Query 180978 CAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 || || || ||||| | | |||||||| || ||| ||||| | || ||||| Sbjct 62421 CAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGC 62369 Score = 421 bits (466), Expect = 8e-113 Identities = 410/525 (78%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 || || |||||||| || ||| | || ||||| || | |||||||| ||||| | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||||||||| || | |||||||| || || || ||| | ||||| | |||||||| Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCACC 32628 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || ||||| || || |||||||| || || |||||||||| | || |||||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 |||||| ||||||||| || | || | ||| |||||||| ||| |||| |||||||| || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 ||||||||||| || || || || ||| | || ||||||||||||| |||||| | || Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | || ||| | | || |||| | | || ||||| |||||||||||| | |||| ||| Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 | ||||||||||||||||||| ||||| ||||| |||||||| ||||| || | || Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 |||||| || |||| || |||||||||||||||||||||||| ||||||| | ||||| Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAA 179384 |||||||| ||||||| |||| | ||||||||||| || || || Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 392 bits (434), Expect = 4e-104 Identities = 376/482 (78%), Gaps = 0/482 (0%) Strand=Plus/Minus Query 179383 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 179442 ||||| || |||||||| ||||||||||| || ||||| || ||||| ||||| || | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 179443 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACA 179502 ||||||||||||||||| || || ||||| || || |||||||||||||||||| Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 179503 GAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCA 179562 || ||| ||| | ||||| || ||||| ||||||||||| || || |||||||| ||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 179563 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCT 179622 || |||||||||||||||||||| || |||||||| || || ||||||||||| || || Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 179623 TTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTG 179682 || || |||||| | ||||| ||||| ||||| || || ||||| |||||| | || | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 179683 TCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAA 179742 ||||| ||||| |||||| | || ||||||||||||||||| || | | || ||| Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 179743 GGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTT 179802 || ||||| ||||||| ||||| ||| | | |||||||| | ||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 179803 ATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTACACCT 179862 ||||||||||||||||| ||||||||||| | || | || | || ||| || || || Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGCGGTTGTTGAAGCTCCAGCT 30821 Query 179863 GT 179864 || Sbjct 30820 GT 30819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610302135168000