Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq538 127 2e-24 seq326 95.1 1e-14 >seq538 Length=19016 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || || || || ||||| |||||||| || ||||||||||| ||||| ||||| | || Sbjct 16721 CGCCTGATTGCGTTTGCTTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCCATC 16780 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||| || |||||||| ||||| | || || |||||||| ||||| Sbjct 16781 TTCTGGCTCAAGAAGCGAGGGCTCATGCCCGGCCTCACCTTTTCAAACGAGCTCATTTCT 16840 Query 60102 CGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131 || ||||| ||||| || || |||||| Sbjct 16841 CGTGACGAAGGCCTGCACACAGACTTTGCA 16870 >seq326 Length=80286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 20373 TTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGA 20432 ||||||||||| ||||||| || |||||||| |||||| ||| ||||||| |||| | Sbjct 57304 TTCGCAACTCGCTGCTCGTGGCACCCATGCCCACCGCCAGCACCAGCCAGATCCTGGGCA 57245 Query 20433 ACAACGAG-GCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGT 20491 |||||||| ||||| ||||| ||||| | |||||||| | || ||| ||| | ||| Sbjct 57244 ACAACGAGTGCTTT-GAGCCTTACACATCAAACATCTATGTCCGCCGTGTGCTGTCGGGT 57186 Query 20492 GAGT 20495 | || Sbjct 57185 GCGT 57182 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 19792 CCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAA 19851 |||||| ||||| |||| || | |||| ||||||||| | || ||| |||||| || Sbjct 58713 CCAGGTGGAGACGGGCAACCCCTTCATGCTTTACAAGGACTCTGCCAACCGCAAGTCCAA 58654 Query 19852 TCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTG 19895 ||| ||||| | ||| | |||||||||||||||||||| |||| Sbjct 58653 CCAGCAGAACTTGGGCACCATCAAGTCGTCCAACCTGTGCACTG 58610 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 79469 AGTCCATGATGTCGGCGTGCCACGGCTC-CAGATAGATGGCGAACGAACCCTTGCGCTTG 79527 |||| | ||||||||||||||||||||| ||| || || ||||| | ||||||||||||| Sbjct 59320 AGTCAAAGATGTCGGCGTGCCACGGCTCGCAG-TACATTGCGAAAGCACCCTTGCGCTTG 59378 Query 79528 CCGCCGCCCTGGTTGACGTACCGGGC 79553 ||||| ||||||| ||||| || || Sbjct 59379 CCGCCACCCTGGTCCACGTAGCGAGC 59404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 78526 CGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTG 78584 ||||| | |||||||| | ||||| ||||| ||||| ||||||||| |||| |||||| Sbjct 57199 CGGCGGACATAGATGTTTGATGTGTAAGGCTC-AAAGCACTCGTTGTTGCCCAGGATCTG 57257 Query 78585 GGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCAT 78637 | ||| |||||| ||||||||||| || || || || || |||| |||| Sbjct 57258 GCTGGTGCTGGCGGTGGGCATGGGTGCCACGAGCAGCGAGTTGCGAATGCCAT 57310 Score = 82.4 bits (90), Expect = 8e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 79555 GTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTG 79614 |||| || || || || ||||||||||||||||||| || |||||| || ||| | Sbjct 59707 GTGTCATTAAACACGCGCAGCATGGGCACGATGCCGTTGGATGTGCCGTTAGTGCCGCGG 59766 Query 79615 ATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGG-ATTCCGATGCCCCCGGACCACTT 79673 || | ||| | || |||||||| | ||| || | || ||||| |||| |||| Sbjct 59767 ATGTACGAGCCGGTGGCGCGAATGTT-GTGCATTGACAGGCCAATGCCGCCGGCAGACTT 59825 Query 79674 GGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCC 79712 ||| || || |||||||||||||| || |||||||| Sbjct 59826 GGAAATACCTGCACACTCCTTGAGCGTATCATAGATGCC 59864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548500116384000