Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3145 104 3e-17 seq538 82.4 8e-11 seq326 82.4 8e-11 >seq3145 Length=24204 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 117467 TGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTG 117526 ||||||||||| || || |||||||| |||||||| | ||| | | ||||||| |||| Sbjct 13833 TGCTCCGCCACATATCCGGCCAGCTGCGCCACCTTGACGTCCGTCTTCAGGTTTCGCTTG 13892 Query 117527 AGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATC 117586 | |||||| || | | ||||||||| | ||||||||| |||||| ||| | ||||| Sbjct 13893 AAGCAGGCGTACAGTATCTTGCGCTGGCCTGGCTTCAGTCCATCCACCATGGAGGGGATG 13952 Query 117587 GAACGCT 117593 || |||| Sbjct 13953 GAGCGCT 13959 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 152191 TGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTG 152250 |||||||| | ||||| |||| |||||||||||| | ||||||| ||||||| |||| Sbjct 13833 TGCTCCGCCACATATCCGGCCAGCTGCGCCACCTTGACGTCCGTCTTCAGGTTTCGCTTG 13892 Query 152251 AGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATC 152310 | |||||||| | | |||||||||| ||| |||| || ||||||| | || || Sbjct 13893 AAGCAGGCGTACAGTATCTTGCGCTGGCCTGGCTTCAGTCCATCCACCATGGAGGGGATG 13952 Query 152311 GAACGCT 152317 || |||| Sbjct 13953 GAGCGCT 13959 >seq538 Length=19016 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || ||||| | ||||| ||||| || || |||||||| | ||| ||||||| ||| Sbjct 16830 TCGTTTGAAAAGGTGAGGCCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGAGCAG 16771 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCG 74899 ||||| || |||||||||||| || || || ||||| || | ||||| Sbjct 16770 AAGGAGCCGGAGAAGAAGATGCCCTCCACGCAAGCAAACGCAATCAGGCG 16721 >seq326 Length=80286 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| ||||||||||| || ||||| ||||| || |||||| || Sbjct 57308 GGCATTCGCAACTCGCTGCTCGTGGCACCCATGCCCACCGCCAGCACCAGCCAGATCCTG 57249 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG 55587 |||||||||||| || ||||| ||||| | |||||||| | ||||| Sbjct 57248 GGCAACAACGAGTGCTTTGAGCCTTACACATCAAACATCTATGTCCGCCG 57199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547191375280000