Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3244 95.1 1e-14 seq3143 86.0 7e-12 seq3190 82.4 9e-11 >seq3244 Length=4747 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||||||||| || || || || || || ||||||||||| || ||||| || ||||| Sbjct 3100 ATTCAGGACAAAGAAGGCATCCCCCCCGATCAGCAGCGTCTCATCTTTGCGGGCAAGCAG 3159 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || ||||||| || || || || ||||| || |||| ||||| ||||| | || || Sbjct 3160 CTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACCTG 3219 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || |||| || || || || Sbjct 3220 GTGCTGCGCCTGCGAGGAGG 3239 >seq3143 Length=13185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || ||||| || ||||| || ||||| | || Sbjct 6997 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGC 7056 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| || |||| ||||| ||||| || || || || ||||| || ||| Sbjct 7057 ACACTGGCGGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGTTGCGCCTGCGC 7116 Query 27628 GGTGG 27632 || || Sbjct 7117 GGAGG 7121 >seq3190 Length=33988 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || ||||| || ||||| || ||||||| || Sbjct 16928 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAGGATGGCCGC 16987 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || || || || |||| ||||| ||||| || || || || |||| || || Sbjct 16988 ACGCTGGCTGATTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGA 17047 Query 27628 GGTGG 27632 ||||| Sbjct 17048 GGTGG 17052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570284736032000