Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq2029 338 8e-88 >seq2029 Length=64692 Score = 338 bits (374), Expect = 8e-88 Identities = 347/453 (77%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 176635 AACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT 176694 ||||||||||||||||||||||||||||| || || || ||||| |||||||| || | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 176695 TTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAAC 176754 ||||| || |||||||| ||||| |||||||| || || | || ||||| || ||| Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 176755 GAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCT 176814 |||||| ||| | |||||||||||||| ||||||||||| || |||||||| || || Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 176815 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGT 176874 || || || ||||| |||||| | || ||||| || |||||||| || ||||| | Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 176875 CTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTT 176934 | || |||||| | || || | ||||||||| | || ||||||||||| | ||| || Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 176935 TGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG----ACAA 176990 | || ||||| |||||| | || ||||||||||||||||| || || ||| |||| Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 176991 CTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGA 177050 || || ||| || |||| || || | |||||||| |||||||||||||| Sbjct 30940 ----GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGA 30885 Query 177051 AGTTATGCACGAGCGTAATGCTCACAACTTCCC 177083 ||| ||||| |||||||| |||||||||||||| Sbjct 30884 AGTAATGCATGAGCGTAACGCTCACAACTTCCC 30852 Score = 336 bits (372), Expect = 3e-87 Identities = 389/524 (74%), Gaps = 0/524 (0%) Strand=Plus/Minus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| ||||||| || | || | ||| | | ||| | |||||||||||||| | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATTGCAGCACCA 176232 |||||||| | | | ||||| | || |||||| | || ||||| |||||||| Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTTATCATCGCTTTTATCGCAGCACCT 32627 Query 176233 CCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAAC 176292 ||||| |||||||| ||||| || || ||||| | || || || | || ||||||||| Sbjct 32626 CCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAAC 32567 Query 176293 ATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATC 176352 ||||| || || || | | || | || ||||||||||| |||| |||||||| || Sbjct 32566 ATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTATT 32507 Query 176353 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTA 176412 ||||||||||| | ||||||||||| | ||||| || || || |||||||| | || Sbjct 32506 TGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGTT 32447 Query 176413 TTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGA 176472 | || ||| | | || |||| |||||||||| || | |||||| | || | | Sbjct 32446 TGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 32387 Query 176473 CTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCA 176532 |||| |||||||| ||||| ||||| ||||| |||||||| ||||||| | || Sbjct 32386 TTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGCT 32327 Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592 || ||| || |||| ||| |||||||||| ||||||||||||||||||||| | || ||| Sbjct 32326 GTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATT 32267 Query 176593 TCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAA 176636 || |||||||| ||||| ||| | ||||||||||| ||||| || Sbjct 32266 TCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603467242752000