Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3190 93.3 1e-13 seq3143 93.3 1e-13 seq3244 91.5 3e-13 >seq3190 Length=33988 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| ||||| || || || | ||||| Sbjct 17037 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCATCC 16978 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||||||||| || ||||| ||||| || |||||||| || Sbjct 16977 TCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGGGG 16934 >seq3143 Length=13185 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| || |||||||| || |||||||| || ||||| || || | || || ||| Sbjct 7103 ACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGTGTGCGGCCGTCCTCC 7044 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 ||||||||||| || ||||| ||||| || |||||||| || Sbjct 7043 AGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGGGG 7003 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| ||||| || ||||||||||| || || ||||| Sbjct 6890 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCTCC 6831 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| |||||||| ||||| || || | |||||| Sbjct 6830 AGGGTGATCGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 6787 >seq3244 Length=4747 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | |||||||| || |||||||| || || || || || | ||||| Sbjct 3224 AGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCC 3165 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || || || || || || || | ||||| |||||| Sbjct 3164 TCCAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGATCGGGGGGGATGCCTTCTTTGTCC 3105 Query 211023 TGGAT 211027 || || Sbjct 3104 TGAAT 3100 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | |||||||| || |||||||| || || || || || | ||||| Sbjct 3676 AGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCC 3617 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || || || || || | || || |||||| Sbjct 3616 TCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCGGGGGGGATGCCCTCTTTGTCC 3557 Query 211023 TG 211024 || Sbjct 3556 TG 3555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159098534114000