Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3244 91.5 1e-13 seq3143 86.0 5e-12 >seq3244 Length=4747 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || |||||||| | ||| | ||||| || | ||| ||| || || || Sbjct 3252 AAATATTTGCATGCCTCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGAT 3193 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || || ||||| || || || | || || ||||| ||||||||||| || |||||||| Sbjct 3192 GTTGTAGTCGGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGACGCTG 3133 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||| |||| ||| | || ||||||||| Sbjct 3132 CTGATCGGGGGGGATGCCTTCTTTGTCC 3105 >seq3143 Length=13185 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||| | | ||| ||||||| || |||||| ||| || || || || || || || Sbjct 7122 GCCTCCGCGCAGGCGCAACACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 7063 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||||| || |||| || ||||| ||||||||||| || || ||||||||||| | ||| Sbjct 7062 CAGTGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGGGG 7003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429526753686800