Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3559 127 5e-24 seq2029 100 7e-16 seq288 100 7e-16 >seq3559 Length=35662 Score = 127 bits (140), Expect = 5e-24 Identities = 203/290 (70%), Gaps = 1/290 (0%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| |||| | |||||||| || |||| ||||| ||||| | Sbjct 22127 AACTTTATATTTAATTTTTGCAGCATTTTCTGGCGTTTTAGGAACTATGTTTTCGGCATT 22068 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||||| || || |||||| | |||| ||| ||| | || Sbjct 22067 AATTCGTATGGAATTAGCGCAACCTGGAAATCAAATTCTAGGTGGAAATCATCAATTATA 22008 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || || ||||| || || || ||| | ||| | || | ||| || ||||| | | Sbjct 22007 TAATGTGATAATTACTGCTCACGCTTTTCTAATGGTGTTTTATTTGGTGATGCCTGCACT 21948 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || || ||||| ||||| || || || | | |||||||||||||||||||| || Sbjct 21947 TATGGGAGGGTTCGGTAATTGGTTTGTGCCCATTTTAATTGGTGCTCCTGATATGGCATT 21888 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTATTT 7728 ||| | | |||||||| ||||| || ||||| || || || ||| ||| Sbjct 21887 TCCTCGTTTAAACAATATTAGTTTCTGGTTACTGCCCCCATCTCTTCTTT 21838 Score = 111 bits (122), Expect = 4e-19 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 || |||| ||| ||| | |||| |||||||||||||||||||||||||||| ||||||| Sbjct 29206 TATGTGTCACAAAATTGGGGGTGGCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTG 29265 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| |||| |||||||||||||||| Sbjct 29266 GTAACACGACGTATAGGGTCTGACAC 29291 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||||||| | || || |||||||||||||||| |||||||| || Sbjct 21621 AAAGGTAATCTATGCATACTCATGCCTGGAGCTCTCATATTAAATATTGTAGTAATTAAA 21680 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| || | || | | ||| || | |||||||||||| ||||| | ||| Sbjct 21681 TTAATAGCACCCATAATACTACTAGCACCAGCTAAATGTAAACTAAAAATTGCAAGATCT 21740 Query 371485 ACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543 |||||||| || |||||| | |||| | ||| || || || || || || || || Sbjct 21741 ACGGAACCTCCAGAGTGACTTGCAATTCCAGCTAATGGAGGATACACCGTCCACCCAGT 21799 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||| ||||| || || || |||||||||||||| || ||||| || ||| Sbjct 4870 AAGATTTGACCATCGGTAATTGAAATCACGTTTGTAGGGATATAGGCTGAAACGTCCCCT 4811 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||||||||| | || || | ||||| | ||| |||| ||| Sbjct 4810 GCTTGTGTTTCAATCACGGGAAGAGCTGTCAATGAGCCACTACC 4767 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 5014 CAACACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATA 5073 || |||| |||| | || |||||| | || |||| ||| || |||||||| |||||| Sbjct 4537 CACCACTCCAATTTTTAGCACCATACTCTGGATGTGCTATGGGCGAATATTTCCGAGATA 4596 Query 5074 ATGGTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAAT 5118 | || | ||||||||||| || || ||||||||||||||||||| Sbjct 4597 ACGGAATGCATGCTTTAATTATTTATGATGATTTAAGTAAACAAT 4641 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 370681 ACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAA 370740 ||| ||||| |||||||||||||||||||| |||||||| || || || | ||||| || Sbjct 21452 ACCGAAAAACCAGAATAAATGTTGATAAAGAATAGGATCTCCACCACCGGCAGGATCGAA 21511 Query 370741 AAAGCTAGTATTAAAATTTCTATCAGTTA 370769 ||| | || |||||||| | ||| |||| Sbjct 21512 AAATGTTGTGTTAAAATTACGATCCGTTA 21540 >seq2029 Length=64692 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 51084 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 51025 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || ||| || |||| Sbjct 51024 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTCCCCAGGCGGGATACTTCACGC 50965 Query 7855 GTTAGCT 7861 ||||||| Sbjct 50964 GTTAGCT 50958 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || |||||||| || || ||||| || ||||| ||||| Sbjct 40679 GAAAATTTGCCCATCAGTAATTGAAATAACATTAGTTGGAATATATGCTGAAACGTCACC 40738 Query 4530 TGCTTGTGTTTCGACAACAGG 4550 | |||| ||||| |||||||| Sbjct 40739 TTCTTGAGTTTCAACAACAGG 40759 >seq288 Length=17438 Score = 100 bits (110), Expect = 7e-16 Identities = 107/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 7723 TTATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCG 7782 |||| || ||| ||||||| || | ||||| | || ||||||||||||| |||||| Sbjct 8237 TTATGTCAAGGACTGGTAAGGTTTTGCGCGTTGTTTCGAATTAAACCACATGTTCCACCA 8296 Query 7783 CTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTG 7842 ||| | | | ||||| || ||||||||||||| |||||| |||| | |||||| | Sbjct 8297 CTTGTGTGAGCCCCCGTCTATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCTCAGGCG 8356 Query 7843 GAATATTT-ACGCGTTAGCT 7861 || |||| ||||||||||| Sbjct 8357 GACCATTTAACGCGTTAGCT 8376 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCA-AGTCTTCTAAAAGGGCAG 6825 |||||| |||||| |||||| ||||||||| | |||||||| | ||| | | ||||| Sbjct 9054 TGAGAGGATGATCGGCCACACTGGGACTGAGACACGGCCCAGACGCTT-TCGAGCGGCAG 8996 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 ||||| ||||||| |||||||||||||||| ||||| || Sbjct 8995 CAGTGAGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 8956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192476194498400