Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq3559 127 5e-24
seq2029 100 7e-16
seq288 100 7e-16
>seq3559
Length=35662
Score = 127 bits (140), Expect = 5e-24
Identities = 203/290 (70%), Gaps = 1/290 (0%)
Strand=Plus/Minus
Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499
||| ||||||||||| |||| | |||||||| || |||| ||||| ||||| |
Sbjct 22127 AACTTTATATTTAATTTTTGCAGCATTTTCTGGCGTTTTAGGAACTATGTTTTCGGCATT 22068
Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559
|| | | |||||||| || || |||||| | |||| ||| ||| | ||
Sbjct 22067 AATTCGTATGGAATTAGCGCAACCTGGAAATCAAATTCTAGGTGGAAATCATCAATTATA 22008
Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619
|| || || ||||| || || || ||| | ||| | || | ||| || ||||| | |
Sbjct 22007 TAATGTGATAATTACTGCTCACGCTTTTCTAATGGTGTTTTATTTGGTGATGCCTGCACT 21948
Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679
|| || || ||||| ||||| || || || | | |||||||||||||||||||| ||
Sbjct 21947 TATGGGAGGGTTCGGTAATTGGTTTGTGCCCATTTTAATTGGTGCTCCTGATATGGCATT 21888
Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTATTT 7728
||| | | |||||||| ||||| || ||||| || || || ||| |||
Sbjct 21887 TCCTCGTTTAAACAATATTAGTTTCTGGTTACTGCCCCCATCTCTTCTTT 21838
Score = 111 bits (122), Expect = 4e-19
Identities = 76/86 (88%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681
|| |||| ||| ||| | |||| |||||||||||||||||||||||||||| |||||||
Sbjct 29206 TATGTGTCACAAAATTGGGGGTGGCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTG 29265
Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707
|||| |||| ||||||||||||||||
Sbjct 29266 GTAACACGACGTATAGGGTCTGACAC 29291
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424
|| |||||| |||||||| | || || |||||||||||||||| |||||||| ||
Sbjct 21621 AAAGGTAATCTATGCATACTCATGCCTGGAGCTCTCATATTAAATATTGTAGTAATTAAA 21680
Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484
|| ||||| || | || | | ||| || | |||||||||||| ||||| | |||
Sbjct 21681 TTAATAGCACCCATAATACTACTAGCACCAGCTAAATGTAAACTAAAAATTGCAAGATCT 21740
Query 371485 ACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543
|||||||| || |||||| | |||| | ||| || || || || || || || ||
Sbjct 21741 ACGGAACCTCCAGAGTGACTTGCAATTCCAGCTAATGGAGGATACACCGTCCACCCAGT 21799
Score = 93.3 bits (102), Expect = 1e-13
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| ||||||||||| ||||| || || || |||||||||||||| || ||||| || |||
Sbjct 4870 AAGATTTGACCATCGGTAATTGAAATCACGTTTGTAGGGATATAGGCTGAAACGTCCCCT 4811
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
||||||||||| | || || | ||||| | ||| |||| |||
Sbjct 4810 GCTTGTGTTTCAATCACGGGAAGAGCTGTCAATGAGCCACTACC 4767
Score = 91.5 bits (100), Expect = 4e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 5014 CAACACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATA 5073
|| |||| |||| | || |||||| | || |||| ||| || |||||||| ||||||
Sbjct 4537 CACCACTCCAATTTTTAGCACCATACTCTGGATGTGCTATGGGCGAATATTTCCGAGATA 4596
Query 5074 ATGGTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAAT 5118
| || | ||||||||||| || || |||||||||||||||||||
Sbjct 4597 ACGGAATGCATGCTTTAATTATTTATGATGATTTAAGTAAACAAT 4641
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 370681 ACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAA 370740
||| ||||| |||||||||||||||||||| |||||||| || || || | ||||| ||
Sbjct 21452 ACCGAAAAACCAGAATAAATGTTGATAAAGAATAGGATCTCCACCACCGGCAGGATCGAA 21511
Query 370741 AAAGCTAGTATTAAAATTTCTATCAGTTA 370769
||| | || |||||||| | ||| ||||
Sbjct 21512 AAATGTTGTGTTAAAATTACGATCCGTTA 21540
>seq2029
Length=64692
Score = 100 bits (110), Expect = 7e-16
Identities = 99/127 (78%), Gaps = 1/127 (1%)
Strand=Plus/Minus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | |
Sbjct 51084 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 51025
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854
|||||| || |||||||||| | |||||| | || | | |||| || ||| || ||||
Sbjct 51024 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTCCCCAGGCGGGATACTTCACGC 50965
Query 7855 GTTAGCT 7861
|||||||
Sbjct 50964 GTTAGCT 50958
Score = 87.8 bits (96), Expect = 4e-12
Identities = 68/81 (84%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||| ||||||||||| || |||||||| || || ||||| || ||||| |||||
Sbjct 40679 GAAAATTTGCCCATCAGTAATTGAAATAACATTAGTTGGAATATATGCTGAAACGTCACC 40738
Query 4530 TGCTTGTGTTTCGACAACAGG 4550
| |||| ||||| ||||||||
Sbjct 40739 TTCTTGAGTTTCAACAACAGG 40759
>seq288
Length=17438
Score = 100 bits (110), Expect = 7e-16
Identities = 107/140 (76%), Gaps = 1/140 (1%)
Strand=Plus/Plus
Query 7723 TTATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCG 7782
|||| || ||| ||||||| || | ||||| | || ||||||||||||| ||||||
Sbjct 8237 TTATGTCAAGGACTGGTAAGGTTTTGCGCGTTGTTTCGAATTAAACCACATGTTCCACCA 8296
Query 7783 CTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTG 7842
||| | | | ||||| || ||||||||||||| |||||| |||| | |||||| |
Sbjct 8297 CTTGTGTGAGCCCCCGTCTATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCTCAGGCG 8356
Query 7843 GAATATTT-ACGCGTTAGCT 7861
|| |||| |||||||||||
Sbjct 8357 GACCATTTAACGCGTTAGCT 8376
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/100 (82%), Gaps = 3/100 (3%)
Strand=Plus/Minus
Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCA-AGTCTTCTAAAAGGGCAG 6825
|||||| |||||| |||||| ||||||||| | |||||||| | ||| | | |||||
Sbjct 9054 TGAGAGGATGATCGGCCACACTGGGACTGAGACACGGCCCAGACGCTT-TCGAGCGGCAG 8996
Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865
||||| ||||||| |||||||||||||||| ||||| ||
Sbjct 8995 CAGTGAGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 8956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192476194498400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |