Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq2029 659 0.0 seq3507 91.5 2e-13 >seq2029 Length=64692 Score = 659 bits (730), Expect = 0.0 Identities = 766/1029 (74%), Gaps = 12/1029 (1%) Strand=Plus/Minus Query 165147 GGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 165206 |||| ||| ||||| |||| ||||||||| | ||||||||||||||||| || ||| Sbjct 63384 GGTTTGTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGG 63325 Query 165207 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACT 165266 || || | ||| | || || ||||| |||||||| ||||| |||||| |||| || ||| Sbjct 63324 TCAGGGTTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACT 63265 Query 165267 ACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAA 165325 || || || || |||||||||||| || | || | ||| ||| | || || || || Sbjct 63264 ACATTTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA- 63206 Query 165326 CTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTC 165384 ||||||| |||| || ||||||||||||||| | ||||||||||||| | | ||| Sbjct 63205 -TTTCTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTC 63147 Query 165385 TATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGA 165444 | ||||| || || ||||||| || || | || |||||||||||||| || || |||| Sbjct 63146 TTTGGGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 63087 Query 165445 CTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAAC 165504 |||| || || || ||||| | ||| |||| || ||||| |||||||| || |||||| Sbjct 63086 CTTTCGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAA 63027 Query 165505 TGGCACGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATT 165560 | || || || ||| ||||||| || || || |||||||| |||| ||| ||| Sbjct 63026 TTGCTCGT----TCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATT 62971 Query 165561 GCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCA 165620 |||| |||||| ||| || || || || || | || ||||| |||||||| ||| Sbjct 62970 TCTGTTTTCGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCA 62911 Query 165621 CCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAAC 165680 || || || || || ||||| ||||| || | | || | ||||| ||||||||| Sbjct 62910 CCAAGTTTTGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAAC 62851 Query 165681 TGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTT 165740 ||||| | || || || || |||||||| ||||| ||| | |||| | || || ||| Sbjct 62850 TGGACTTTAAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTT 62791 Query 165741 TCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAAC 165800 | ||||||||||||| ||| ||||| || || | | |||||||||||| |||||| Sbjct 62790 TGCGCCATTCATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAAC 62731 Query 165801 ACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAAC 165860 || ||| || ||| | ||||| | ||| ||||| || || ||||| ||||||||| Sbjct 62730 ACATTCCGTGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAAC 62671 Query 165861 CGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTT 165920 | || |||||||| || |||||| | ||||| ||||| |||||| | ||||||||| Sbjct 62670 AGATTTTGGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTT 62611 Query 165921 ATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCA 165980 ||||| ||||||||||| | || ||||||| ||| |||||||| | | ||||| || Sbjct 62610 ATGCTTTTTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCT 62551 Query 165981 CTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAG 166040 | || | |||||||| ||||| || || || || ||| | ||||| || |||||||| Sbjct 62550 TTAAACTTACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAA 62491 Query 166041 TTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCT 166100 |||||||| |||||||| ||||| ||||| | || ||||| | ||||| ||| ||||| Sbjct 62490 TTTGAAACTTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCT 62431 Query 166101 CCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAAC 166160 || ||| || |||||||| || |||| |||||||| || || || ||| | || ||| Sbjct 62430 GCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAAC 62371 Query 166161 GCACTTTAA 166169 || |||||| Sbjct 62370 GCTCTTTAA 62362 Score = 390 bits (432), Expect = 1e-103 Identities = 403/525 (77%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 || ||| | ||||| ||| || || || ||||| || |||||||||| || || | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACA-TGTTTCATCATCGCCTTCATCGGTGCTCC 164046 |||||||| | | | || ||| || ||||| |||||||| || |||| || || Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTT-ATCATCGCTTTTATCGCAGCACC 32628 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 |||||| || |||||||| ||||| || || || ||||||| || | || |||||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 |||||| ||||||||| |||| ||| |||||||||| |||||| | || |||||||| || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 ||||||||||| ||| ||||||||| | |||||||||||||||| |||||| | || Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | || ||| | | || |||| | ||||||||||||||||||||||| | |||| ||| Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 | | ||||||||||| |||||| || || ||||| || || || |||||||| | || Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 || ||| | |||| || |||||||||||||||||||||||| |||||| | || || Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAA 164451 ||||| || || |||| |||| | || ||||| |||||||| || Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 381 bits (422), Expect = 7e-101 Identities = 354/449 (79%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 164450 AACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTG 164509 ||||| || |||||||| ||||||||||| ||||| || ||||| ||||| ||||| | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 164510 TTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAAT 164569 ||| ||| ||||||||||| || || |||||||| || ||||||| || || || || Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 164570 GAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCC 164629 || || ||| | |||||||| || ||||| ||||||||||| |||||||||||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 164630 GCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCG 164689 ||||| || ||||| |||||| | ||||||||||||||||| || |||||||| ||||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 164690 CTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTT 164749 | || |||||| | || || ||||| ||||| ||||| |||||||||||| | || || Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 164750 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAG 164809 || ||||| |||||| | || ||||||||||||||||| || | | ||| || Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 164810 GGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTG 164869 || ||||| | ||||| ||||| ||| || |||||||||| || || |||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 164870 ATGCACGAGCGTAATGCTCACAACTTCCC 164898 ||||| |||||||| |||||||||||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852 >seq3507 Length=10852 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/79 (86%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 160901 TTTTACGGGGTGTAGCGCAGA--GGTAGCGCGGCTGTTTTGGGAACAGCAGGTCGCAGGT 160958 |||| |||| |||||||||| |||||||| ||||||||||||||| ||||||||||| Sbjct 9035 TTTTTCGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGT 8976 Query 160959 TCGATCCCTGTCACCCCGA 160977 |||| ||||||| ||||| Sbjct 8975 TCGAATCCTGTCATCCCGA 8957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557629305552000