Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_031242.1
Length=174307
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 659 0.0
seq3507 91.5 2e-13
>seq2029
Length=64692
Score = 659 bits (730), Expect = 0.0
Identities = 766/1029 (74%), Gaps = 12/1029 (1%)
Strand=Plus/Minus
Query 165147 GGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 165206
|||| ||| ||||| |||| ||||||||| | ||||||||||||||||| || |||
Sbjct 63384 GGTTTGTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGG 63325
Query 165207 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACT 165266
|| || | ||| | || || ||||| |||||||| ||||| |||||| |||| || |||
Sbjct 63324 TCAGGGTTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACT 63265
Query 165267 ACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAA 165325
|| || || || |||||||||||| || | || | ||| ||| | || || || ||
Sbjct 63264 ACATTTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA- 63206
Query 165326 CTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTC 165384
||||||| |||| || ||||||||||||||| | ||||||||||||| | | |||
Sbjct 63205 -TTTCTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTC 63147
Query 165385 TATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGA 165444
| ||||| || || ||||||| || || | || |||||||||||||| || || ||||
Sbjct 63146 TTTGGGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 63087
Query 165445 CTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAAC 165504
|||| || || || ||||| | ||| |||| || ||||| |||||||| || ||||||
Sbjct 63086 CTTTCGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAA 63027
Query 165505 TGGCACGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATT 165560
| || || || ||| ||||||| || || || |||||||| |||| ||| |||
Sbjct 63026 TTGCTCGT----TCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATT 62971
Query 165561 GCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCA 165620
|||| |||||| ||| || || || || || | || ||||| |||||||| |||
Sbjct 62970 TCTGTTTTCGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCA 62911
Query 165621 CCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAAC 165680
|| || || || || ||||| ||||| || | | || | ||||| |||||||||
Sbjct 62910 CCAAGTTTTGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAAC 62851
Query 165681 TGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTT 165740
||||| | || || || || |||||||| ||||| ||| | |||| | || || |||
Sbjct 62850 TGGACTTTAAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTT 62791
Query 165741 TCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAAC 165800
| ||||||||||||| ||| ||||| || || | | |||||||||||| ||||||
Sbjct 62790 TGCGCCATTCATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAAC 62731
Query 165801 ACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAAC 165860
|| ||| || ||| | ||||| | ||| ||||| || || ||||| |||||||||
Sbjct 62730 ACATTCCGTGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAAC 62671
Query 165861 CGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTT 165920
| || |||||||| || |||||| | ||||| ||||| |||||| | |||||||||
Sbjct 62670 AGATTTTGGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTT 62611
Query 165921 ATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCA 165980
||||| ||||||||||| | || ||||||| ||| |||||||| | | ||||| ||
Sbjct 62610 ATGCTTTTTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCT 62551
Query 165981 CTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAG 166040
| || | |||||||| ||||| || || || || ||| | ||||| || ||||||||
Sbjct 62550 TTAAACTTACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAA 62491
Query 166041 TTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCT 166100
|||||||| |||||||| ||||| ||||| | || ||||| | ||||| ||| |||||
Sbjct 62490 TTTGAAACTTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCT 62431
Query 166101 CCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAAC 166160
|| ||| || |||||||| || |||| |||||||| || || || ||| | || |||
Sbjct 62430 GCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAAC 62371
Query 166161 GCACTTTAA 166169
|| ||||||
Sbjct 62370 GCTCTTTAA 62362
Score = 390 bits (432), Expect = 1e-103
Identities = 403/525 (77%), Gaps = 2/525 (0%)
Strand=Plus/Minus
Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987
|| ||| | ||||| ||| || || || ||||| || |||||||||| || || |
Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687
Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACA-TGTTTCATCATCGCCTTCATCGGTGCTCC 164046
|||||||| | | | || ||| || ||||| |||||||| || |||| || ||
Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTT-ATCATCGCTTTTATCGCAGCACC 32628
Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106
|||||| || |||||||| ||||| || || || ||||||| || | || ||||||||
Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568
Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166
|||||| ||||||||| |||| ||| |||||||||| |||||| | || |||||||| ||
Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508
Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226
||||||||||| ||| ||||||||| | |||||||||||||||| |||||| | ||
Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448
Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286
| || ||| | | || |||| | ||||||||||||||||||||||| | |||| |||
Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388
Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346
| | ||||||||||| |||||| || || ||||| || || || |||||||| | ||
Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328
Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406
|| ||| | |||| || |||||||||||||||||||||||| |||||| | || ||
Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268
Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAA 164451
||||| || || |||| |||| | || ||||| |||||||| ||
Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223
Score = 381 bits (422), Expect = 7e-101
Identities = 354/449 (79%), Gaps = 0/449 (0%)
Strand=Plus/Minus
Query 164450 AACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTG 164509
||||| || |||||||| ||||||||||| ||||| || ||||| ||||| ||||| |
Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241
Query 164510 TTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAAT 164569
||| ||| ||||||||||| || || |||||||| || ||||||| || || || ||
Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181
Query 164570 GAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCC 164629
|| || ||| | |||||||| || ||||| ||||||||||| ||||||||||||||
Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121
Query 164630 GCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCG 164689
||||| || ||||| |||||| | ||||||||||||||||| || |||||||| |||||
Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061
Query 164690 CTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTT 164749
| || |||||| | || || ||||| ||||| ||||| |||||||||||| | || ||
Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001
Query 164750 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAG 164809
|| ||||| |||||| | || ||||||||||||||||| || | | ||| ||
Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941
Query 164810 GGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTG 164869
|| ||||| | ||||| ||||| ||| || |||||||||| || || ||||||||
Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881
Query 164870 ATGCACGAGCGTAATGCTCACAACTTCCC 164898
||||| |||||||| ||||||||||||||
Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852
>seq3507
Length=10852
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/79 (86%), Gaps = 2/79 (3%)
Strand=Plus/Minus
Query 160901 TTTTACGGGGTGTAGCGCAGA--GGTAGCGCGGCTGTTTTGGGAACAGCAGGTCGCAGGT 160958
|||| |||| |||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 9035 TTTTTCGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGT 8976
Query 160959 TCGATCCCTGTCACCCCGA 160977
|||| ||||||| |||||
Sbjct 8975 TCGAATCCTGTCATCCCGA 8957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557629305552000
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