Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq2029 650 0.0 seq3507 82.4 9e-11 >seq2029 Length=64692 Score = 650 bits (720), Expect = 0.0 Identities = 770/1039 (74%), Gaps = 3/1039 (0%) Strand=Plus/Minus Query 178814 AACACTACAGAAACAAAGGGGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCG 178873 || ||| ||||| || | || | ||||||||| | |||||||||||| || || || Sbjct 63402 AAAACTCAAGAAA-AACGCGGTTTGTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCG 63344 Query 178874 GTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGG 178933 ||||||||||| || |||||||| | ||| | ||||| ||||| || | ||||| || Sbjct 63343 TTTCGTTTTTGTAGGATGGTCAGGGTTACTTTTATTCCCGACTGCATATCTTGCACTTGG 63284 Query 178934 CGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTC 178993 |||||| | || || || ||||| || || || ||||||||||| || | ||| |||| Sbjct 63283 TGGTTGGTTTACAGGAACTACATTTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTC 63224 Query 178994 GTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGG 179053 ||| | || || ||||||||| | |||||||| || || ||||| || | | | || Sbjct 63223 ATATTTAGAAGGCTGTAATTTCTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGG 63164 Query 179054 ACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCA 179113 ||||| || | |||| ||||| ||||||||||| || ||||| || ||| ||| Sbjct 63163 TCATTCTTTATTATTTCTTTGGGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCA 63104 Query 179114 ACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCAT 179173 |||||| || || ||| |||| || || || |||||| | || | || || ||||| || Sbjct 63103 ACTTGGAGGTCTTTGGACTTTCGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTAT 63044 Query 179174 GCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTT 179233 |||||| || |||||||| || ||| ||| |||||||| || || || || || || Sbjct 63043 GCTTCGTCAATTTGAAATTGCTCGTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTT 62984 Query 179234 TTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTC 179293 ||||| ||||||| |||| || || ||||| || || || || || | || || || Sbjct 62983 TTCTGCTCCAATTTCTGTTTTCGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGG 62924 Query 179294 GTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACA 179353 ||||||||||| || ||||| ||||| || |||||||| || | | || | || Sbjct 62923 TTGGTTCTTTGCACCAAGTTTTGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCA 62864 Query 179354 GGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGG 179413 |||||||| |||||||| | ||||| ||||| |||||||||||||| ||| | || || Sbjct 62863 AGGCTTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGG 62804 Query 179414 CGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAG 179473 | || || ||||| ||||||||||||||||| ||||| |||||||| |||||||| | Sbjct 62803 AGCTGCGTTACTTTGCGCCATTCATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGG 62744 Query 179474 TGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGAT 179533 ||| |||| |||||| || || | || || |||| ||| || || || || || Sbjct 62743 TGATGGTGCAAACACATTCCGTGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTAT 62684 Query 179534 GGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTG 179593 ||| ||||| ||| | || |||||||| ||||||||| | || || ||||| ||||| Sbjct 62683 GGTAACTGCTAACAGATTTTGGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTG 62624 Query 179594 GCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTAT 179653 | |||| ||||||||| | ||||||||||| | || ||||||| | |||||| | Sbjct 62623 GTTACACTTCTTTATGCTTTTTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGT 62564 Query 179654 TATTGGTCTTGCACTTAACCTTA-GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGG 179712 | ||||| || |||| |||| | ||||| || || ||||||||||| || | || | Sbjct 62563 AGTAGGTCTAGCT-TTAAACTTACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTG 62505 Query 179713 CAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTAC 179772 |||| ||||| || || || || ||||||||||| || ||||| || || |||||| | | Sbjct 62504 CAGAAGATCCAGAATTTGAAACTTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTC 62445 Query 179773 GTGCTTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTAT 179832 ||||||||||||| | ||||| || |||||||| ||||||| ||||| || || | Sbjct 62444 GTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTT 62385 Query 179833 TGCCAAGAGGCAACGCTCT 179851 | ||| | || |||||||| Sbjct 62384 TACCACGTGGAAACGCTCT 62366 Score = 389 bits (430), Expect = 5e-103 Identities = 358/451 (79%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 178120 AACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTG 178179 ||||| || |||||||| ||||| ||| | ||||| || ||||| ||||||||||| | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 178180 TTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAAC 178239 ||| ||| ||||||||||| || || ||||| || || |||||||||| || |||||| Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 178240 GAAAGTCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTG 178297 ||| |||| ||| | |||||||| ||||||||||||||||| || ||||||||||||| Sbjct 31180 GAA--TCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTG 31123 Query 178298 CTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTT 178357 | |||||||| ||||||||||| | || ||||||||||| || || |||||||| |||| Sbjct 31122 CAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTT 31063 Query 178358 CGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTG 178417 | | || |||||| | || || ||||| ||||| ||||| ||||| |||||| | ||| Sbjct 31062 CATTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTA 31003 Query 178418 TTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTC 178477 || || ||||| |||||| | || ||||||||||||||||| || | | ||| | Sbjct 31002 TTTCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCAC 30943 Query 178478 AGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAG 178537 | ||| || | ||||| ||||| ||| || |||||||||| ||||||||||||| Sbjct 30942 AAGGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAG 30883 Query 178538 TCATGCACGAGCGTAATGCTCACAACTTCCC 178568 | ||||| |||||||| |||||||||||||| Sbjct 30882 TAATGCATGAGCGTAACGCTCACAACTTCCC 30852 Score = 367 bits (406), Expect = 2e-96 Identities = 398/525 (76%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 || ||| | ||||| || ||| | || ||| | || |||||||||| ||||| | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||| ||||| | | |||| || || || || ||| ||||||| |||| || || Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCACC 32628 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 |||||| || ||||| || |||||||| || || ||||||| || | || || ||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 |||||||||||||||| || ||||| |||||||||| || ||| | || ||||| || || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 ||||||||||||||||| || || ||| | ||||| |||||||||| |||||| | | Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | || ||| | | || |||| | | ||||||||||||||||||||| | |||| ||| Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 ||||||||||||| ||||| || || ||||| || ||||| || |||||| | || Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||||||| | | || || |||||||||||||||||||||| | |||||| | ||||| Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAA 178121 ||| || || |||| |||| | || |||||||| ||||| || Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 >seq3507 Length=10852 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/88 (84%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 158118 GGAAAGGTGGTCGAGTGGTTGATGG-CTCTGGTCTTGAAAACCAGCGAAG-TGAGAG-CT 158174 ||||||||| |||||||||||||| ||| ||| ||||||||| || || || ||| || Sbjct 6546 GGAAAGGTGTCCGAGTGGTTGATGGTCTC-GGTTTTGAAAACCGACGTAGTTGCGAGACT 6604 Query 158175 TCCGTGGGTTCGAATCCCACCCTTTCCG 158202 ||| ||||||||||||| ||||||||| Sbjct 6605 ACCGGGGGTTCGAATCCCCCCCTTTCCG 6632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596280366176000