Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq2029 580 1e-160 >seq2029 Length=64692 Score = 580 bits (642), Expect = 1e-160 Identities = 742/1020 (73%), Gaps = 2/1020 (0%) Strand=Plus/Minus Query 170594 GTTCGATGTCCTGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGG 170653 ||| ||||| | |||||||||||| || || || || || ||||| || ||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 170654 ACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATT 170713 | ||| | || || ||||| ||||||||| |||| || ||| |||| || || ||||| Sbjct 63319 GTTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACATT 63260 Query 170714 TGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCT 170773 ||| || |||||| || || || | || | ||| || | ||||| ||||||| | Sbjct 63259 TGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAATTTCTT 63200 Query 170774 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 170833 || || || || || || || || || ||||||||||||| | | | |||||||| Sbjct 63199 AACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGGGG 63140 Query 170834 TCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGT 170893 || || |||| || ||||| || |||| |||||||| || || |||| ||| || Sbjct 63139 CCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTCGT 63080 Query 170894 GGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG 170953 || || ||||| | ||| | || || ||||| |||||||| || |||||||| ||| Sbjct 63079 AGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCTCG 63020 Query 170954 TCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGT 171013 | ||| ||| | || || || || || ||||| |||| ||| || |||| || || Sbjct 63019 TTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTTCGT 62960 Query 171014 CAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGG 171073 |||||||| || || || | || || ||| |||||||||| ||||| ||||| Sbjct 62959 TTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTTTGG 62900 Query 171074 AGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAA 171133 ||||| ||||| ||||| || | | || | ||||| ||||| |||||||| | || Sbjct 62899 TGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTTAAA 62840 Query 171134 TCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCA 171193 || || |||||||||||||| || ||| | || || | ||| || |||| || ||||| Sbjct 62839 CCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCATTCA 62780 Query 171194 TGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGC 171253 ||||| ||| ||||| || || | | ||||||||||||| |||||||| || || Sbjct 62779 TGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGC 62720 Query 171254 ATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTC 171313 ||| || | ||||| | ||||| ||||| |||||||| |||||||| | || ||||| Sbjct 62719 GTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTGGTC 62660 Query 171314 GCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGT 171373 || || |||||| | || || ||||| |||||||| || ||||||||||| ||||| Sbjct 62659 TCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTTTGT 62600 Query 171374 TCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAG 171433 |||||| | || |||||| | ||| | | || | | ||||| ||| |||| |||| Sbjct 62599 TCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCT-TTAAACTTAC 62541 Query 171434 G-GCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGT 171492 | ||||| |||||||| || || | | || |||||||||||||| || || || | Sbjct 62540 GTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAACTT 62481 Query 171493 TCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACC 171552 |||||||||| || ||||| || || |||||| ||||||| |||||||| | ||| | Sbjct 62480 TCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATC 62421 Query 171553 AACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 | || |||||||| |||| ||||| ||||| ||| |||| ||||| || || |||| || Sbjct 62420 AGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAAT 62361 Score = 363 bits (402), Expect = 2e-95 Identities = 350/449 (78%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 169874 AACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTG 169933 ||||| || |||||||| ||||| ||||| || ||||| || || |||||||| || | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 169934 TTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAAC 169993 || || ||||||||| || || ||||| ||| | |||||||| || |||||| Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 169994 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCC 170053 || || ||| | |||||||| ||||||||||||||||| || |||||||||||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 170054 GCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCA 170113 ||||| || ||||||||||| | || |||||||||||||| || |||||||| |||||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 170114 CTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTC 170173 | || |||||| | || || ||||| |||||||| || ||||| || ||| | ||| | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 170174 TCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAG 170233 || || ||||| |||||| | || ||||||||||||||||| || | | ||| || Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 170234 GGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTG 170293 || ||||| | ||||| ||||| ||| || |||||||||| ||||| |||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 170294 ATGCACGAGCGTAATGCTCACAACTTCCC 170322 ||||| |||||||| |||||||||||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852 Score = 363 bits (402), Expect = 2e-95 Identities = 397/525 (76%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 || ||| | ||||| || |||||| |||||| | || |||||||||| || || | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACT-TGTTTCATCATCGCCTTCATCGGTGCTCC 169470 ||||| || | | | ||||| | ||||| |||||||| || |||| || || Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTT-ATCATCGCTTTTATCGCAGCACC 32628 Query 169471 CCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAA 169530 ||||| || ||||| || ||||| || || ||| ||||||| || | || || ||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 169531 CATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCAT 169590 |||||| ||||||||| || | || |||| |||||||||||| | || ||||| || || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 169591 CTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGT 169650 ||||||||||| ||| || |||||||| |||||||||||||||| |||||| | || Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 169651 CTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCG 169710 | || ||| || | || |||| | ||||||||||||||||||||||||| || | || Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 169711 TCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGC 169770 | | |||||||| || ||||| ||||||||||| || || ||||| ||||| | || Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328 Query 169771 TGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTAT 169830 ||| ||| | ||||||| | || ||||| || |||||||| | ||||||| | ||||| Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268 Query 169831 CTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAA 169875 || || || ||||||| |||| | || |||||||||||||| || Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592171751072000