Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq625 165 2e-35
seq3244 104 5e-17
seq3190 102 2e-16
seq3143 95.1 3e-14
seq512 86.0 1e-11
seq511 86.0 1e-11
>seq625
Length=19960
Score = 165 bits (182), Expect = 2e-35
Identities = 232/326 (71%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 316167 GTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATC 316226
|||||| |||| || || ||||| ||||||||||| ||||| |||||||| || || |
Sbjct 9575 GTCTTCGCCGGTGGCGTACCGCCACTGGATGTACTGGTTGGGAGTCATGTCCAGGTGGTT 9634
Query 316227 CTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 316286
||||||||||||||| |||||||| |||||||| || | |||| || || ||||||||
Sbjct 9635 CTCGATGTGGTGGAAGGCGTGCTGCGCCACGTAGGCGACCCGCAGGTTGGGGTGCTTCCA 9694
Query 316287 AACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTCC 316346
|| ||| || |||| || || || |||| || | || || ||
Sbjct 9695 CACCAGACCAGACTCAGCCTCCAGCTCACCAGTGAGCAGACGGATCTGGGTGGACTTGCC 9754
Query 316347 CGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGATACCTGGGCATTCACGTT 316406
|| ||||| |||| || |||| | ||||||||||| ||||| | || |||||
Sbjct 9755 GGCACCGTTGGGTCCCAGCACCGCGATGCGCGAGTTGAGCGAGACCTGCACGTTGACGTT 9814
Query 316407 GTCGAAGACCAGTTTGTCCGTCCCAGGATACTTGAAACCCACCCCGCGAAGCTTCATGAT 316466
|| || ||| | || |||| || |||||||| || ||||| | ||||| |||
Sbjct 9815 GTTGAGGACGTGCTTCTCCGCTGTTGGGTACTTGAAGTTGACGCCGCGCATCTTCAGGAT 9874
Query 316467 GGCACGGTCCTTCGAAGTGATACCCT 316492
|||||||||||| || || | |||||
Sbjct 9875 GGCACGGTCCTTGGAGGTCACACCCT 9900
Score = 140 bits (154), Expect = 7e-28
Identities = 288/424 (68%), Gaps = 11/424 (3%)
Strand=Plus/Plus
Query 315684 CTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATC 315743
||| || || | ||||||||||| || ||||||||||| ||||||| ||||||||
Sbjct 8891 CTTGAGGGCTGCGGCCATGGCACCCAGGGACTCGCGGTCCAGGTAGTTGGTGGGCTCATC 8950
Query 315744 AAGAACGATGACGTGGGGTTGTTGCCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTG 315803
|| || | || |||||| || ||||| | ||||| || | || ||||| | || ||
Sbjct 8951 CAGCACCAGGATGTGGGGCTGCTGCCACATGGCGGCTCCCAGCACCAGCTTGACCTTCTG 9010
Query 315804 CCCACCAGACAGTCCACGGATGCGAGAATGAGTGGTAAATTCTGGGTCAAGGCCAACATT 315863
|| |||||||| || ||||| | || || ||||| || || | | ||||| | ||
Sbjct 9011 GCCTCCAGACAGGCCGCGGATCTGGGAGTGGGTGGTGAACTCGGCGGGCAGGCCCAGGTT 9070
Query 315864 AGCCATATGTTCTTCCACGTTCTTCGCGGTCAGTGGTTT---AAACATACCGTTTGCAAC 315920
||||| || |||||||| || ||||| || || | || ||| || |
Sbjct 9071 GGCCATCATCTCCTCCACGTTGCGGGCAGTCAGGGGCTTGCCCAGCAGTCCGGCGGCGGC 9130
Query 315921 GGCTTCTTTGGTGTCAATGTCGTTCAGGATCTTAC-CAAACCCATACTCCTCGAGACGTT 315979
|| || || |||| |||||| |||| ||||| | || ||||| |||||| || | |
Sbjct 9131 AGCCTCCTTCATGTCGATGTCGGTCAGCATCTTGCTGAAGCCCAT-CTCCTCCAGCCTGT 9189
Query 315980 CGCGGGACATCCACTGGGTAGTCTC---GTCGTTTTTCCACTGAACTTCATACTCATACG 316036
|||| | |||||| | | ||||| ||| |||||||| || || ||||| ||
Sbjct 9190 CGCGAGTCATCCA---GCTGGTCTCCAGCTCGCCCTTCCACTGCACCTCGTACTCGTAGC 9246
Query 316037 ACTTCTTGAGTTTGCGTCGCCCAAGGATCTTGTCAAGGATTTTCTTCACACCGTCAACAA 316096
|||||| ||||| || || | |||||||| | ||| || ||||| || |
Sbjct 9247 CGCGCTTGAGCTTGCGGCGGGACAGCAGCTTGTCAACCACGCGCTTGACGCCGTCCACCA 9306
Query 316097 CTTT 316100
| ||
Sbjct 9307 CCTT 9310
Score = 131 bits (144), Expect = 4e-25
Identities = 192/272 (71%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 316561 TCGGGACGCTTCTTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTG 316620
|| || |||| || ||| || | |||||| || || |||||||||||||| | ||||
Sbjct 10155 TCAGGGCGCTGCTGCACAAACTTGGACAGGTTGCCCAGGTACTTCTTCAGCTTGAAGTTG 10214
Query 316621 GGTTCGTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATACA 316680
||||| |||||||| || | ||||| | |||||||| ||||| ||||| || |||
Sbjct 10215 TCCTCGTAGTGGATGATGGAGGAGCAGACGGAGTCGAGGAAGCCAGAGTCGTGCGAGACA 10274
Query 316681 ATCACACATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGAC 316740
| ||| | | ||||| || ||| ||||| ||||| ||||||||| ||| || |
Sbjct 10275 ACCACGGAGGTGACGCCCTTGAGGCCAACCAGGTAGTCAATCAGCCAGGCCACGTTGGTG 10334
Query 316741 ACAGAAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCG 316800
| ||||||||| || || || || | | | | |||| || ||||| |||
Sbjct 10335 GTGTCCAAATGGTTGGTAGGCTCATCCAGCAACATGATGTCGGCGTTCATGAGCATGGCG 10394
Query 316801 CGTGCGAGAGCAAGCTTCATTTTCCACCCCCC 316832
|| || || || |||||||| ||||| || ||
Sbjct 10395 CGGGCCAGGGCCAGCTTCATCTTCCAGCCACC 10426
Score = 131 bits (144), Expect = 4e-25
Identities = 229/333 (69%), Gaps = 3/333 (1%)
Strand=Plus/Plus
Query 317568 CAACTTTGCCATGTTCCGGATGATGATACACGTCTTCCGACGTACGGGGGTGGTGCGATC 317627
|| ||| |||||||| |||||||||| || | ||| || || | |||||||||||| ||
Sbjct 12275 CACCTTGGCCATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTC 12334
Query 317628 GGCGAGACCGCGGACGAGTAGTGGGGTCAAGATAGACAGGGTCTTCGCATCGACCGACTG 317687
|| || ||||| || || || || || ||| |||||||| ||||| || |||
Sbjct 12335 GGTCAGGCCGCGCACAAGCAGCGGCACCAGGATGGACAGGGTGCGGGCATCCACGCTCTG 12394
Query 317688 GACGAATGTGGTCGCCGACAGGTTATGGACGCACTCGGGGACGTCCTGAGGAGACCCAAT 317747
|| || || ||||||||||| || || ||||| ||||| || || || | || ||
Sbjct 12395 CACAAAGGTCGTCGCCGACAGCTTGTGCACGCAGTCGGGCACCTCGCCGGGTGCGCCGAT 12454
Query 317748 GCTCTTCACGAGATGGGGGATGAAGGGTTCGATGTCTTTGTTATCAATTTGA---CAACA 317804
|| | ||||||||| | ||||| || ||||| ||| |||| | || ||
Sbjct 12455 GCAGCGGATGAGATGGGGCACAAAGGGCTCAATGTCGCGGTTGCCAATGGCAGTGCAGCA 12514
Query 317805 CGCGATAAGAGCCTTCGTGGCAGCGTCTTTTACCACTTGCTTCAAGTCGAGCATGCAATC 317864
| | | || || | ||||| || | || | |||||| ||| | |||||| |
Sbjct 12515 CTTGGTGAGCGCGTCGGTGGCGGCCGCGCGCACGGTTGGCTTCAGGTCAACCATGCAGTT 12574
Query 317865 TGTCACGACAGGGACGATTTCGGGGAGGTACAC 317897
||||| || || || || ||||| ||||||||
Sbjct 12575 GGTCACCACTGGCACAATCTCGGGCAGGTACAC 12607
Score = 100 bits (110), Expect = 6e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 317057 TCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTC 317116
|| ||||||| || || ||||| || ||||| ||||||||||| || || || || | |
Sbjct 11164 TCACCCTCATGAGGGTGGACTTTCCGGCACCGTTGGGGCCGCACAGGCCGTAGCGCTGGC 11223
Query 317117 CCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGA 317176
| |||||| | | |||| |||||| || || ||||| ||||| || || || ||||
Sbjct 11224 CGCGCTTCAGGTGCAGGCGGGCGTTGTTGAGCAGGATCTTGCCACCGTAGGCGAGGGAGA 11283
Query 317177 ACTCACAATCACACAGGTCCTCGCC 317201
|||| || | || |||||||||||
Sbjct 11284 ACTCGCAGTTGCAGAGGTCCTCGCC 11308
>seq3244
Length=4747
Score = 104 bits (114), Expect = 5e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || |||||||| || ||||| || || ||| || || |||||||||||||| ||
Sbjct 3691 CCGCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3632
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||||||||||||||| || || || ||||||||||| | || || || || ||
Sbjct 3631 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCGGGGGGG 3572
Query 282993 ATACCCTCCTTGTCTTG 283009
|| ||||| ||||| ||
Sbjct 3571 ATGCCCTCTTTGTCCTG 3555
Score = 100 bits (110), Expect = 6e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || |||||||| || ||||| || || ||| || || |||||||||||||| ||
Sbjct 3239 CCTCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3180
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||||||||||||||| || || || || |||||||| | ||| || || || ||
Sbjct 3179 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGATCGGGGGGG 3120
Query 282993 ATACCCTCCTTGTCTTGGAT 283012
|| || || ||||| || ||
Sbjct 3119 ATGCCTTCTTTGTCCTGAAT 3100
>seq3190
Length=33988
Score = 102 bits (112), Expect = 2e-16
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| |||||||| || ||||| || | ||| || || ||||||||||| |||||
Sbjct 17052 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 16993
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986
||||||||||||||||| || || || || |||||||||| || || ||||||
Sbjct 16992 AGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCA 16939
>seq3143
Length=13185
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054
|||||||||||| || ||||| || || || | ||||| |||||||||| || || ||
Sbjct 6891 ACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCTC 6832
Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| ||||||||||| ||||| | ||||| ||||| ||||||||
Sbjct 6831 CAGGGTGATCGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 6787
Score = 89.7 bits (98), Expect = 1e-12
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || |||||||| | ||||| || | |||| || || |||||||||||||| ||
Sbjct 7121 CCTCCGCGCAGGCGCAACACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 7062
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986
|| |||||||| ||||| || || || || |||||||||| || || ||||||
Sbjct 7061 AGTGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCA 7008
>seq512
Length=1943
Score = 86.0 bits (94), Expect = 1e-11
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808
|||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct 142 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCAGGGTTCGATTCCC 196
>seq511
Length=327
Score = 86.0 bits (94), Expect = 1e-11
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808
|||||||||||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct 109 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCAGGGTTCGATTCCC 163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046690919154400
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