Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq625 165 2e-35 seq3244 104 5e-17 seq3190 102 2e-16 seq3143 95.1 3e-14 seq512 86.0 1e-11 seq511 86.0 1e-11 >seq625 Length=19960 Score = 165 bits (182), Expect = 2e-35 Identities = 232/326 (71%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 316167 GTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATC 316226 |||||| |||| || || ||||| ||||||||||| ||||| |||||||| || || | Sbjct 9575 GTCTTCGCCGGTGGCGTACCGCCACTGGATGTACTGGTTGGGAGTCATGTCCAGGTGGTT 9634 Query 316227 CTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 316286 ||||||||||||||| |||||||| |||||||| || | |||| || || |||||||| Sbjct 9635 CTCGATGTGGTGGAAGGCGTGCTGCGCCACGTAGGCGACCCGCAGGTTGGGGTGCTTCCA 9694 Query 316287 AACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTCC 316346 || ||| || |||| || || || |||| || | || || || Sbjct 9695 CACCAGACCAGACTCAGCCTCCAGCTCACCAGTGAGCAGACGGATCTGGGTGGACTTGCC 9754 Query 316347 CGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGATACCTGGGCATTCACGTT 316406 || ||||| |||| || |||| | ||||||||||| ||||| | || ||||| Sbjct 9755 GGCACCGTTGGGTCCCAGCACCGCGATGCGCGAGTTGAGCGAGACCTGCACGTTGACGTT 9814 Query 316407 GTCGAAGACCAGTTTGTCCGTCCCAGGATACTTGAAACCCACCCCGCGAAGCTTCATGAT 316466 || || ||| | || |||| || |||||||| || ||||| | ||||| ||| Sbjct 9815 GTTGAGGACGTGCTTCTCCGCTGTTGGGTACTTGAAGTTGACGCCGCGCATCTTCAGGAT 9874 Query 316467 GGCACGGTCCTTCGAAGTGATACCCT 316492 |||||||||||| || || | ||||| Sbjct 9875 GGCACGGTCCTTGGAGGTCACACCCT 9900 Score = 140 bits (154), Expect = 7e-28 Identities = 288/424 (68%), Gaps = 11/424 (3%) Strand=Plus/Plus Query 315684 CTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATC 315743 ||| || || | ||||||||||| || ||||||||||| ||||||| |||||||| Sbjct 8891 CTTGAGGGCTGCGGCCATGGCACCCAGGGACTCGCGGTCCAGGTAGTTGGTGGGCTCATC 8950 Query 315744 AAGAACGATGACGTGGGGTTGTTGCCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTG 315803 || || | || |||||| || ||||| | ||||| || | || ||||| | || || Sbjct 8951 CAGCACCAGGATGTGGGGCTGCTGCCACATGGCGGCTCCCAGCACCAGCTTGACCTTCTG 9010 Query 315804 CCCACCAGACAGTCCACGGATGCGAGAATGAGTGGTAAATTCTGGGTCAAGGCCAACATT 315863 || |||||||| || ||||| | || || ||||| || || | | ||||| | || Sbjct 9011 GCCTCCAGACAGGCCGCGGATCTGGGAGTGGGTGGTGAACTCGGCGGGCAGGCCCAGGTT 9070 Query 315864 AGCCATATGTTCTTCCACGTTCTTCGCGGTCAGTGGTTT---AAACATACCGTTTGCAAC 315920 ||||| || |||||||| || ||||| || || | || ||| || | Sbjct 9071 GGCCATCATCTCCTCCACGTTGCGGGCAGTCAGGGGCTTGCCCAGCAGTCCGGCGGCGGC 9130 Query 315921 GGCTTCTTTGGTGTCAATGTCGTTCAGGATCTTAC-CAAACCCATACTCCTCGAGACGTT 315979 || || || |||| |||||| |||| ||||| | || ||||| |||||| || | | Sbjct 9131 AGCCTCCTTCATGTCGATGTCGGTCAGCATCTTGCTGAAGCCCAT-CTCCTCCAGCCTGT 9189 Query 315980 CGCGGGACATCCACTGGGTAGTCTC---GTCGTTTTTCCACTGAACTTCATACTCATACG 316036 |||| | |||||| | | ||||| ||| |||||||| || || ||||| || Sbjct 9190 CGCGAGTCATCCA---GCTGGTCTCCAGCTCGCCCTTCCACTGCACCTCGTACTCGTAGC 9246 Query 316037 ACTTCTTGAGTTTGCGTCGCCCAAGGATCTTGTCAAGGATTTTCTTCACACCGTCAACAA 316096 |||||| ||||| || || | |||||||| | ||| || ||||| || | Sbjct 9247 CGCGCTTGAGCTTGCGGCGGGACAGCAGCTTGTCAACCACGCGCTTGACGCCGTCCACCA 9306 Query 316097 CTTT 316100 | || Sbjct 9307 CCTT 9310 Score = 131 bits (144), Expect = 4e-25 Identities = 192/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 316561 TCGGGACGCTTCTTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTG 316620 || || |||| || ||| || | |||||| || || |||||||||||||| | |||| Sbjct 10155 TCAGGGCGCTGCTGCACAAACTTGGACAGGTTGCCCAGGTACTTCTTCAGCTTGAAGTTG 10214 Query 316621 GGTTCGTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATACA 316680 ||||| |||||||| || | ||||| | |||||||| ||||| ||||| || ||| Sbjct 10215 TCCTCGTAGTGGATGATGGAGGAGCAGACGGAGTCGAGGAAGCCAGAGTCGTGCGAGACA 10274 Query 316681 ATCACACATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGAC 316740 | ||| | | ||||| || ||| ||||| ||||| ||||||||| ||| || | Sbjct 10275 ACCACGGAGGTGACGCCCTTGAGGCCAACCAGGTAGTCAATCAGCCAGGCCACGTTGGTG 10334 Query 316741 ACAGAAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCG 316800 | ||||||||| || || || || | | | | |||| || ||||| ||| Sbjct 10335 GTGTCCAAATGGTTGGTAGGCTCATCCAGCAACATGATGTCGGCGTTCATGAGCATGGCG 10394 Query 316801 CGTGCGAGAGCAAGCTTCATTTTCCACCCCCC 316832 || || || || |||||||| ||||| || || Sbjct 10395 CGGGCCAGGGCCAGCTTCATCTTCCAGCCACC 10426 Score = 131 bits (144), Expect = 4e-25 Identities = 229/333 (69%), Gaps = 3/333 (1%) Strand=Plus/Plus Query 317568 CAACTTTGCCATGTTCCGGATGATGATACACGTCTTCCGACGTACGGGGGTGGTGCGATC 317627 || ||| |||||||| |||||||||| || | ||| || || | |||||||||||| || Sbjct 12275 CACCTTGGCCATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTC 12334 Query 317628 GGCGAGACCGCGGACGAGTAGTGGGGTCAAGATAGACAGGGTCTTCGCATCGACCGACTG 317687 || || ||||| || || || || || ||| |||||||| ||||| || ||| Sbjct 12335 GGTCAGGCCGCGCACAAGCAGCGGCACCAGGATGGACAGGGTGCGGGCATCCACGCTCTG 12394 Query 317688 GACGAATGTGGTCGCCGACAGGTTATGGACGCACTCGGGGACGTCCTGAGGAGACCCAAT 317747 || || || ||||||||||| || || ||||| ||||| || || || | || || Sbjct 12395 CACAAAGGTCGTCGCCGACAGCTTGTGCACGCAGTCGGGCACCTCGCCGGGTGCGCCGAT 12454 Query 317748 GCTCTTCACGAGATGGGGGATGAAGGGTTCGATGTCTTTGTTATCAATTTGA---CAACA 317804 || | ||||||||| | ||||| || ||||| ||| |||| | || || Sbjct 12455 GCAGCGGATGAGATGGGGCACAAAGGGCTCAATGTCGCGGTTGCCAATGGCAGTGCAGCA 12514 Query 317805 CGCGATAAGAGCCTTCGTGGCAGCGTCTTTTACCACTTGCTTCAAGTCGAGCATGCAATC 317864 | | | || || | ||||| || | || | |||||| ||| | |||||| | Sbjct 12515 CTTGGTGAGCGCGTCGGTGGCGGCCGCGCGCACGGTTGGCTTCAGGTCAACCATGCAGTT 12574 Query 317865 TGTCACGACAGGGACGATTTCGGGGAGGTACAC 317897 ||||| || || || || ||||| |||||||| Sbjct 12575 GGTCACCACTGGCACAATCTCGGGCAGGTACAC 12607 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 317057 TCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTC 317116 || ||||||| || || ||||| || ||||| ||||||||||| || || || || | | Sbjct 11164 TCACCCTCATGAGGGTGGACTTTCCGGCACCGTTGGGGCCGCACAGGCCGTAGCGCTGGC 11223 Query 317117 CCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGA 317176 | |||||| | | |||| |||||| || || ||||| ||||| || || || |||| Sbjct 11224 CGCGCTTCAGGTGCAGGCGGGCGTTGTTGAGCAGGATCTTGCCACCGTAGGCGAGGGAGA 11283 Query 317177 ACTCACAATCACACAGGTCCTCGCC 317201 |||| || | || ||||||||||| Sbjct 11284 ACTCGCAGTTGCAGAGGTCCTCGCC 11308 >seq3244 Length=4747 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || || ||| || || |||||||||||||| || Sbjct 3691 CCGCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3632 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || || ||||||||||| | || || || || || Sbjct 3631 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCGGGGGGG 3572 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||| ||||| || Sbjct 3571 ATGCCCTCTTTGTCCTG 3555 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || || ||| || || |||||||||||||| || Sbjct 3239 CCTCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3180 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || || || |||||||| | ||| || || || || Sbjct 3179 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGATCGGGGGGG 3120 Query 282993 ATACCCTCCTTGTCTTGGAT 283012 || || || ||||| || || Sbjct 3119 ATGCCTTCTTTGTCCTGAAT 3100 >seq3190 Length=33988 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | ||| || || ||||||||||| ||||| Sbjct 17052 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 16993 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||||||||||||||||| || || || || |||||||||| || || |||||| Sbjct 16992 AGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCA 16939 >seq3143 Length=13185 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| || ||||| || || || | ||||| |||||||||| || || || Sbjct 6891 ACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCTC 6832 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 6831 CAGGGTGATCGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 6787 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| | ||||| || | |||| || || |||||||||||||| || Sbjct 7121 CCTCCGCGCAGGCGCAACACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 7062 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || || |||||||||| || || |||||| Sbjct 7061 AGTGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCA 7008 >seq512 Length=1943 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| |||||| |||||| Sbjct 142 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCAGGGTTCGATTCCC 196 >seq511 Length=327 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||||||||| |||||||||||||||||||||| |||||| |||||| Sbjct 109 TAGTATAGTGGTTAGTATTCCTGCCTGTCACGCAGGAGACCAGGGTTCGATTCCC 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046690919154400