Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3244 105 5e-18 seq3143 105 5e-18 seq3190 91.5 1e-13 >seq3244 Length=4747 Score = 105 bits (116), Expect = 5e-18 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || |||| ||| | || ||||||||| | ||| |||||| |||||||| Sbjct 3249 TATTTGCATGCCTCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTT 3190 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| ||||| || ||| | || ||||||||||| || |||||||| | ||||||||| Sbjct 3189 GTAGTCGGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGACGCTGCTG 3130 Query 44221 ATCTGAAGGCACACCTTCCTTTTCC 44245 ||| | || | ||||| || ||| Sbjct 3129 ATCGGGGGGGATGCCTTCTTTGTCC 3105 Score = 100 bits (110), Expect = 2e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 44106 TCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 |||| || |||| ||| | || ||||||||| | ||| |||||| ||||||||||| | Sbjct 3696 TCATGCCGCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGT 3637 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| || ||| | || ||||||||||| ||||||||||| | ||||||||||| Sbjct 3636 CGGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATC 3579 >seq3143 Length=13185 Score = 105 bits (116), Expect = 5e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | |||||||||||| |||||| |||||| ||||||||||| || Sbjct 7124 ATGCCTCCGCGCAGGCGCAACACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCC 7065 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| ||| |||| ||||||||||| || |||||||||| |||||||| || Sbjct 7064 GCCAGTGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 7009 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 || |||| ||||| ||| ||||| ||||| | | |||||||| | || |||| Sbjct 6895 GCTCACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCA 6836 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| || |||||||| |||||||||||||||||||| || |||||| Sbjct 6835 CCTCCAGGGTGATCGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCATG 6786 >seq3190 Length=33988 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| ||| | || ||||||||| || ||| |||||| |||||||||||||| || Sbjct 17052 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 16993 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| | || || |||||||| || |||||||||| |||||||| || Sbjct 16992 AGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 16940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359974605421200