Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq3244 105 5e-18
seq3143 105 5e-18
seq3190 91.5 1e-13
>seq3244
Length=4747
Score = 105 bits (116), Expect = 5e-18
Identities = 111/145 (77%), Gaps = 1/145 (1%)
Strand=Plus/Minus
Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160
||||| ||| || |||| ||| | || ||||||||| | ||| |||||| ||||||||
Sbjct 3249 TATTTGCATGCCTCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTT 3190
Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220
||| ||||| || ||| | || ||||||||||| || |||||||| | |||||||||
Sbjct 3189 GTAGTCGGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGACGCTGCTG 3130
Query 44221 ATCTGAAGGCACACCTTCCTTTTCC 44245
||| | || | ||||| || |||
Sbjct 3129 ATCGGGGGGGATGCCTTCTTTGTCC 3105
Score = 100 bits (110), Expect = 2e-16
Identities = 93/118 (79%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 44106 TCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165
|||| || |||| ||| | || ||||||||| | ||| |||||| ||||||||||| |
Sbjct 3696 TCATGCCGCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGT 3637
Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| || ||| | || ||||||||||| ||||||||||| | |||||||||||
Sbjct 3636 CGGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATC 3579
>seq3143
Length=13185
Score = 105 bits (116), Expect = 5e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || || | ||| | |||||||||||| |||||| |||||| ||||||||||| ||
Sbjct 7124 ATGCCTCCGCGCAGGCGCAACACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCC 7065
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| ||| ||| |||| ||||||||||| || |||||||||| |||||||| ||
Sbjct 7064 GCCAGTGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 7009
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288
|| |||| ||||| ||| ||||| ||||| | | |||||||| | || ||||
Sbjct 6895 GCTCACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCA 6836
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|||||| || |||||||| |||||||||||||||||||| || ||||||
Sbjct 6835 CCTCCAGGGTGATCGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCATG 6786
>seq3190
Length=33988
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| |||| ||| | || ||||||||| || ||| |||||| |||||||||||||| ||
Sbjct 17052 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCC 16993
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| ||| | || || |||||||| || |||||||||| |||||||| ||
Sbjct 16992 AGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 16940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359974605421200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |