Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3143 113 4e-20 seq3244 105 6e-18 seq3190 93.3 4e-14 >seq3143 Length=13185 Score = 113 bits (124), Expect = 4e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || |||||||| ||||||||| ||||||||| ||||| ||||| | Sbjct 7122 GCCTCCGCGCAGGCGCAACACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 7063 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| || ||||||||||| || || ||||||||||| ||||| | ||| Sbjct 7062 CAGTGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGGGG 7003 >seq3244 Length=4747 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || || | |||||| |||| ||| ||||||||| ||||| ||||||| Sbjct 3692 GCCGCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGC 3633 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || |||||||||||||| || || |||||||| || || | ||| Sbjct 3632 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCGGGGGG 3573 Query 41755 AACGCTCTCCTTGTCC 41770 | || ||| |||||| Sbjct 3572 GATGCCCTCTTTGTCC 3557 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| |||| ||| ||||||||| ||||| ||||||| Sbjct 3240 GCCTCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGC 3181 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| || || || || ||||| || || | ||| Sbjct 3180 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGATCGGGGGG 3121 Query 41755 AACGCTCTCCTTGTCC 41770 | || || |||||| Sbjct 3120 GATGCCTTCTTTGTCC 3105 >seq3190 Length=33988 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 41631 CACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGT 41690 || |||| || || || || | |||||| ||||| ||| ||||||||| ||||| || | Sbjct 17057 CATCGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAAT 16998 Query 41691 CGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 | | || ||||| | || || ||||||||||| || || ||||||||||| ||||| | Sbjct 16997 CAGCCAGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAG 16938 Query 41751 CGGG 41754 ||| Sbjct 16937 GGGG 16934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462283196320000