Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq87 104 5e-17 >seq87 Length=36794 Score = 104 bits (114), Expect = 5e-17 Identities = 144/201 (72%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 210324 GTCAGAGACAGAGTGGCGTTATCAATGCGGGAGAAGTTGCAGGTACCGGAGGGTTGGCGA 210383 ||||| ||| |||||||| || |||||||||||||||||||| |||||||| ||| | Sbjct 17223 GTCAGGTTCAGGGTGGCGTTGTCGATGCGGGAGAAGTTGCAGGTTCCGGAGGGCTGGTGC 17282 Query 210384 CCAGCGGGCTTCAGGGCGAAGGAGTACAGGTAGACACC---GGCGGGGGTGACGCCACCG 210440 | ||||||| || |||||||||||| || || || || || || | | Sbjct 17283 TCCTCGGGCTTGAGTCCGAAGGAGTACACGTTGATGCCCTTGGACCTGGGGATGTTGGTG 17342 Query 210441 ATGCTCTGGTAAGGCTGCACCTTGTTGAAGTAAGAGCCCTTGCGGGTGGCGAAACGATCT 210500 | |||||| ||||||||| ||||||||| |||||| || | |||| | || Sbjct 17343 TGGTGCTGGTAGGGCTGCACCAGGTTGAAGTACGAGCCCAGACGCTCGTCGAACCTGTCG 17402 Query 210501 TGACCGTTCAGCTGGATCTTG 210521 || ||||| ||||| | |||| Sbjct 17403 TGGCCGTTGAGCTGCAGCTTG 17423 Score = 96.9 bits (106), Expect = 7e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 210748 GGGTGGCGGTCTCGGAACCAGTGAACTGTAGCTGTTCGATCAGGTACTCGTGGGGTAGCT 210807 ||| | ||| |||| || |||||||| ||||| ||||||||||||||||||| | || Sbjct 17575 GGGAGACGGACTCGCCGCCGGTGAACTGCAGCTGCTCGATCAGGTACTCGTGGGAGACCT 17634 Query 210808 GGGCGAAACGGGTGCGTTCTTGGGTATCCAGGAAGATGTAGTCAACCCACA 210858 ||||||| | | ||| || | ||| |||||| ||| |||||| ||||||| Sbjct 17635 GGGCGAACCTGCGGCGCTCGTCGGTGTCCAGGTAGACGTAGTCCACCCACA 17685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822563342780