Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq106 93.3 5e-14 seq100 89.7 6e-13 >seq106 Length=3132237 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | || |||||| || || ||||| || ||||| || || | Sbjct 2288926 CGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 2288985 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| ||||| ||||||||||| | || | || ||||||| Sbjct 2288986 TCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 2289045 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || |||| | | | ||||| || ||||| || | |||||| Sbjct 2289046 TCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATG 2289105 Query 43149 GTTTTGCCCGTTAGCGTCT 43167 || ||||| || || |||| Sbjct 2289106 GTCTTGCCAGTCAGAGTCT 2289124 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | ||| |||||| || || ||||| || ||||| || || | Sbjct 2288074 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCA 2288133 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | || | || ||||||| Sbjct 2288134 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 2288193 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||| || ||||| || | ||||||| Sbjct 2288194 TCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATG 2288253 Query 43149 GTTTTGCCCGTTAGCGTC 43166 || ||||| || || ||| Sbjct 2288254 GTCTTGCCAGTCAGAGTC 2288271 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | ||| |||||| || || ||||| || ||||| || || | Sbjct 2288527 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 2288586 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | || | || ||||||| Sbjct 2288587 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 2288646 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||| || ||||| || | ||||||| Sbjct 2288647 TCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATG 2288706 Query 43149 GTTTTGCCCGTTAGCGTC 43166 || ||||| || || ||| Sbjct 2288707 GTCTTGCCAGTGAGAGTC 2288724 >seq100 Length=2336451 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| || | ||| |||||| || || ||||| || ||||| || || | Sbjct 981209 ACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCC 981150 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || ||||||||||| | || | || |||||| Sbjct 981149 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTT 981090 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || || | || | | ||||| || ||||| || | ||||| Sbjct 981089 GTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGAT 981030 Query 43148 GGTTTTGCCCGTTAGCGTC 43166 ||| ||||| || || ||| Sbjct 981029 GGTCTTGCCAGTGAGAGTC 981011 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| ||||| || | | |||| ||||| || | ||| |||||| || || ||||| Sbjct 982040 CTACTGTCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTA 981981 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || ||||| || || |||| || |||||||| || || || || || ||||||||||| Sbjct 981980 GTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 981921 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 43129 | || | | |||||||||| ||| || || | || | | ||||| || Sbjct 981920 CGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGA 981861 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 ||||| || | |||||||| ||||| || || ||| Sbjct 981860 CTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 981824 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | ||| |||||| || || ||||| || ||||| || || | Sbjct 980806 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCA 980747 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | || | || ||||||| Sbjct 980746 TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTG 980687 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||| || ||||| || | |||||| Sbjct 980686 TCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATG 980627 Query 43149 GTTTTGCCCGTTAGCGTC 43166 || ||||| || || ||| Sbjct 980626 GTCTTGCCAGTCAGGGTC 980609 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| || | ||| |||||| || || ||||| || ||||| || || | Sbjct 981616 ACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCC 981557 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || || ||||||||||| | || | | |||||| Sbjct 981556 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATTCCCTCCTT 981497 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || || | || | | ||||| || ||||| || | ||||| Sbjct 981496 GTCCTGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGAT 981437 Query 43148 GGTTTTGCCCGTTAGCGTC 43166 ||| ||||| || || ||| Sbjct 981436 GGTCTTGCCAGTGAGGGTC 981418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816842341680