Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq106 116 2e-21 seq100 109 4e-19 seq99 87.8 1e-12 >seq106 Length=3132237 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | ||| || ||||| ||||||||||||| | Sbjct 2288914 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2288973 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| ||||| ||||| ||||||||||| ||| Sbjct 2288974 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 2289033 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | || | || || || Sbjct 2289034 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACC 2289093 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 || | |||||||| ||||| || ||||| Sbjct 2289094 TCAAGGGTGATGGTCTTGCCAGTCAGAGT 2289122 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||||| | Sbjct 2288515 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2288574 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 2288575 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 2288634 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | || | || | || || || Sbjct 2288635 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 2288694 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 |||| ||||||||| ||||| |||||||| Sbjct 2288695 TCCAGCGTGATGGTCTTGCCAGTGAGAGT 2288723 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||| | | Sbjct 2288062 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCC 2288121 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 2288122 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 2288181 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | || | || | || || || Sbjct 2288182 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 2288241 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 |||| ||||||||| ||||| || ||||| Sbjct 2288242 TCCAGCGTGATGGTCTTGCCAGTCAGAGT 2288270 >seq100 Length=2336451 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | |||||||||||| | || || ||||| ||||||||||||| Sbjct 982034 TCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 981975 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 |||| ||| |||| |||| ||||||||| || || || || ||||||||||| ||| Sbjct 981974 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 981915 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | || | || | || || || Sbjct 981914 GATTCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 981855 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 |||| |||||||| ||||| ||||| || Sbjct 981854 CTCCAGGGTGATGGTCTTGCCAGTGAGGGT 981825 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||||| | Sbjct 981220 CCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 981161 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| || Sbjct 981160 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 981101 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | || | || | || || || Sbjct 981100 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 981041 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 |||| |||||||| ||||| |||||||| Sbjct 981040 TCCAGTGTGATGGTCTTGCCAGTGAGAGT 981012 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||||| | Sbjct 981627 CCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 981568 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| || Sbjct 981567 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 981508 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | || | || | || || || Sbjct 981507 ATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCACC 981448 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 |||| |||||||| ||||| ||||| || Sbjct 981447 TCCAGGGTGATGGTCTTGCCAGTGAGGGT 981419 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || ||||| ||||||||||||| | Sbjct 980818 CCTCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 980759 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || || ||||||||||| || Sbjct 980758 AGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGG 980699 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | || | || | || || || Sbjct 980698 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 980639 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 |||| |||||||| ||||| || || || Sbjct 980638 TCCAGTGTGATGGTCTTGCCAGTCAGGGT 980610 >seq99 Length=2590953 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTA--AAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 || |||||||| | |||||||||||| | | | ||| | |||| ||||| ||||||| Sbjct 315586 CCACCGCGCAGGCGCAGCACCAGGTGGAGGATGGACTCT---TCTGGATGTTATAGTCGG 315530 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 ||| | ||| ||| || | |||||| || || || || || |||| |||||| || Sbjct 315529 CCAGGGGGCGGCTGTCCTCTAGCTGCTTACCGGCAAAGATCAGGCGCTACTGGTCCGGGG 315470 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| | ||| ||| | | | || | || | || || | Sbjct 315469 GGATGCCCTCCTTGTCCTGGACCTTGGACTTGACGTTCTCGATGGTGTCAGATGACTCCA 315410 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGT 34371 | |||| |||||||| ||||||||||| || Sbjct 315409 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGT 315379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071582631360