Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq57 125 6e-24 seq2 104 2e-17 seq102 91.5 1e-13 seq106 87.8 2e-12 >seq57 Length=1368 Score = 125 bits (138), Expect = 6e-24 Identities = 304/456 (67%), Gaps = 6/456 (1%) Strand=Plus/Plus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 |||||||||| || ||||| || ||| ||| | | || ||||| | ||| || Sbjct 865 GGCGATCGAGCTGAGGTTGCACACCGCCGTCTCTGCGGGGCTCGAGTACTGCAGAATCTC 924 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 | || |||||| | || || ||||| |||||||||||| || || ||||| Sbjct 925 ACTGCACAGATTGGAGCTGCGGATGGTCCCCAAGTTGCTCTGGTTGGACTTCCGGTTGCA 984 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 | ||||||| |||||| |||||| || || ||||||| |||||| | | |||||| Sbjct 985 GGCATCCTTGAAGAGCAGGTACGGTGTCCCGGTCTCGATCTGCGAGACCAGGATCGCGTT 1044 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 ||||| ||| | |||| || | || || |||| | ||||||| | ||| Sbjct 1045 CCACAGCGTCCGTGCGTCGACCTGGCGAACCCACCTACTCGACGCCTCGTAACCCTCGTA 1104 Query 23260 CAAC-GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 || | || | || | | || || | ||| | || ||||| | | || || Sbjct 1105 CAGCAGCTTGAAGTCCTGCCCCACCGC-GTCAGGGAGCCCGGGACACGCGCTGGGGTCCA 1163 Query 23319 TGAGACTCCACATTGAGTCATT--TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 | || ||| ||||||||| | | ||||| ||| || || ||||||| ||| | Sbjct 1164 TCAGGCTC--CATTGAGTCCCTGACTGCACGCGCTCCATGAAGAGGTCCGGTACCCACAT 1221 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 |||||||| || ||||| || ||| |||||| | ||| ||||| || | |||| Sbjct 1222 GGCGTAGAAGAGATCGCGCGCCCGCCTCTCCTCGTCACCGTGATTCTTCTTGAGGTCCAG 1281 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||||| || ||||| || ||||| ||||||| ||| Sbjct 1282 GAAGTCGAAGACGTCTGCGTGCCATGGCTCGATGTA 1317 >seq2 Length=534433 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || || || || | ||||||||| || ||| || || |||||||| ||||| || Sbjct 280806 GCAATTGATGCCAAATTGCATACAGCTGTCTCTTCAGCAGATGTGTACTCCACAATCTCA 280747 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || |||||||| ||||| || ||||||| ||| ||| || || | ||||| Sbjct 280746 GTGCAGAGATTGCTGCACTTGATGGTGCCCAGATTCTGCTGATTTGACTTCCTGTTGCAG 280687 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 || ||||||||||||||||| || |||| ||||| |||||| Sbjct 280686 GAGTCCTTGTAGAGCATGTATGGGTTGCCTGTCTCAACCTGC 280645 >seq102 Length=2901463 Score = 91.5 bits (100), Expect = 1e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT- 58021 || || ||| |||| | |||| ||| ||| || || || ||||| |||||||| Sbjct 1633624 TTTGCGGAGCGGCTGGTGGCGTGGGCCTGCGTGGAGGGCATCTTCTTCAGCGGCAGCTTC 1633683 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| || | || ||| | ||||| |||||||| |||| |||||| || || |||||| Sbjct 1633684 TGCAGCG-TCTTCTGGCTCAAGAAGCGCGGCCTCATGCACGGCCTCACCTTCTCCAACGA 1633742 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 | | || || ||||||||||| ||||| || || || ||||| ||||||| Sbjct 1633743 GCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTGTACTC 1633796 >seq106 Length=3132237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 31209 AGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGG 31268 |||||||||| ||||| || |||||| | || || || | || |||| |||||| | Sbjct 2289124 AGACTCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCGAAAATG 2289065 Query 31269 TCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCG 31328 |||| | || ||||||||| ||| | || || ||||||||||| || || |||| Sbjct 2289064 TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCCTCATCTTCG 2289005 Query 31329 CTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGA 31388 | ||||| ||| |||| || || || ||| || ||||| || || || || | Sbjct 2289004 CCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCTA 2288945 Query 31389 CTCTTCATCTGGTACT 31404 | || || ||||| || Sbjct 2288944 CCCTCCACCTGGTGCT 2288929 Score = 82.4 bits (90), Expect = 7e-11 Identities = 154/223 (69%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAG 57971 ||||||||||| ||||| | | ||||| ||||||| || || || ||| Sbjct 1548096 GCCAAGAAGGCGCAGTGGGCGCAGCACTGGATCGGCAGCGCCAG---CAGCTTTGCGGAG 1548040 Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAAT 58030 | || | ||||||||| ||| || || || ||| ||| ||| |||| || | Sbjct 1548039 CGCCTGGTGGCGTTCGCCTGCGTGGAGGGCATCCACTTCAGCGGCTCCTTCTGCGCCA-T 1547981 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090 || ||| | ||||| ||| || ||||||||||| || || ||||||| | || || Sbjct 1547980 CTTCTGGCTCAAGAAGCGCCTGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTC 1547921 Query 58091 GCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 |||||||||||| || || || || || || ||||| ||||| Sbjct 1547920 GCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTCCTGTAC 1547878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765809359520