Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq102 102 1e-16 seq106 98.7 1e-15 seq57 87.8 3e-12 >seq102 Length=2901463 Score = 102 bits (112), Expect = 1e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTT 125485 |||||||| | ||| ||| |||||||||||||| || || || ||| || |||| Sbjct 1633636 CTGGTGGCGTGGGCCTGCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCTGCAGCG-TCTT 1633694 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||||||||||||||||| ||||||| ||| || || | |||||| | || || || Sbjct 1633695 CTGGCTCAAGAAGCGCGGCCTCATGCACGGCCTCACCTTCTCCAACGAGCTCATCTCCCG 1633754 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||||||||| ||||| ||||| ||| Sbjct 1633755 CGACGAGGGCCTCCACTGCGACTTCGCC 1633782 >seq106 Length=3132237 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTT 125485 |||||||| |||||| ||| ||||||||| ||| ||| | || |||| ||||||| Sbjct 1548036 CTGGTGGCGTTCGCCTGCGTGGAGGGCATCCACTTCAGCGGCTCCTTCTGCG-CCATCTT 1547978 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||||||||||||||| ||||||||||| || || | |||||| | || || || Sbjct 1547977 CTGGCTCAAGAAGCGCCTGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCGCG 1547918 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCC 125573 ||||||||||| ||| ||||| ||| Sbjct 1547917 CGACGAGGGCCTGCACACCGACTTCGCC 1547890 >seq57 Length=1368 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 97164 GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 ||||| ||||| |||||||| || ||| || | ||| | ||||| || || ||| Sbjct 1065 GTCGACGCACGGACGCTGTGGAACGCGATCCTGGTCTCGCAGATCGAGACCGGGACACCG 1006 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 ||| | |||| ||||||| || || || || |||||| || ||||||| |||||| Sbjct 1005 TACCTGCTCTTCAAGGATGCCTGCAACCGGAAGTCCAACCAGAGCAACTTGGGGACCATC 946 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTT 97343 ||||||||||||||| || ||| | ||||| | || | |||||||| || Sbjct 945 CGCAGCTCCAATCTGTGCAGTGAGATTCTGCAGTACTCGAGCCCCGCAGAGACGGCGGTG 886 Query 97344 TGC 97346 ||| Sbjct 885 TGC 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058218096560