Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq106 95.1 1e-14 seq100 89.7 5e-13 >seq106 Length=3132237 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||| | ||||| ||||| || | ||| || ||| || ||| | | Sbjct 2288926 CGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 2288985 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||| ||||| ||||| || || ||| Sbjct 2288986 TCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 2289045 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| ||| ||||||| || || |||| |||||| Sbjct 2289046 TCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATG 2289105 Query 94973 GTTTTTCCAGTAAGAGT 94989 || || ||||| ||||| Sbjct 2289106 GTCTTGCCAGTCAGAGT 2289122 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||| | || || ||||| || | ||| || ||| || ||| | | Sbjct 2288527 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 2288586 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || || || || || ||| Sbjct 2288587 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 2288646 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||| ||| ||| ||||||| | || || || | ||||||| Sbjct 2288647 TCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATG 2288706 Query 94973 GTTTTTCCAGTAAGAGT 94989 || || ||||| ||||| Sbjct 2288707 GTCTTGCCAGTGAGAGT 2288723 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||| | || || ||||| || | ||| || || || ||| | | Sbjct 2288074 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCA 2288133 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || || || || || ||| Sbjct 2288134 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 2288193 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||| ||| ||| ||||||| | || || || | ||||||| Sbjct 2288194 TCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATG 2288253 Query 94973 GTTTTTCCAGTAAGAGT 94989 || || ||||| ||||| Sbjct 2288254 GTCTTGCCAGTCAGAGT 2288270 >seq100 Length=2336451 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||| | || || ||||| || | ||| || ||| || ||| | | Sbjct 981208 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA 981149 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || |||||||| || || ||| Sbjct 981148 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTG 981089 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||| ||| ||| ||||||| | || || || | |||||| Sbjct 981088 TCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATG 981029 Query 94973 GTTTTTCCAGTAAGAGT 94989 || || ||||| ||||| Sbjct 981028 GTCTTGCCAGTGAGAGT 981012 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || |||| ||||| ||| | || || ||||| || | ||| | Sbjct 980826 TTTGCATGCCTCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 980767 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || ||| | |||||||||||| || ||| ||||||| | | ||||| | Sbjct 980766 AGTCGGCCAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGT 980707 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | ||||| || || || ||||| | || || ||| ||| ||| ||||||| | Sbjct 980706 CCGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGG 980647 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 || || || | |||||||| || ||||| || || Sbjct 980646 ACTCCACCTCCAGTGTGATGGTCTTGCCAGTCAGGGT 980610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290606014160