Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq105 107 3e-19 seq94 107 3e-19 seq91 102 1e-17 seq4 102 1e-17 seq102 93.3 7e-15 >seq105 Length=3273802 Score = 107 bits (118), Expect = 3e-19 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| |||||| | ||| ||||||| ||||| || ||||||||| | || Sbjct 593993 AGGCATCACCAAGCCTGCTATCAGGCGTTTGGCTCGCCGTGGAGGTGTCAAGCGTATTTC 593934 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| || |||| | | ||| ||||| | ||||| ||| ||| ||| Sbjct 593933 TGGCCTCATCTACGAGGAGACCAGGGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCAG 593874 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 |||||| || || || |||||||| | ||||||||||| || | || |||| Sbjct 593873 GGATGCTGTCACATACACTGAGCACGCCCGCAGGAAGACTGTCACAGCCTTCGACGTCGT 593814 Query 16651 CTATGCATTGAAACGTCAAGGCCG 16674 || || |||| || || || || Sbjct 593813 GTACGCTCTGAAGCGCCAGGGACG 593790 >seq94 Length=1310662 Score = 107 bits (118), Expect = 3e-19 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| || ||| | ||||||||||| ||||| || ||||||||| |||| Sbjct 1284198 AGGCATCACCAAGCCCGCCATCAGGCGTCTGGCTCGCCGTGGAGGTGTCAAGCGTATCTC 1284139 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| || |||| | | ||| | ||| | ||||| ||| ||| ||| Sbjct 1284138 TGGCCTCATCTACGAGGAGACCAGGGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCAG 1284079 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 |||||| | ||| || |||||||| | ||||||||||| || | || |||| Sbjct 1284078 GGATGCTGTGACCTACACTGAGCACGCCCGCAGGAAGACTGTCACAGCCTTCGACGTCGT 1284019 Query 16651 CTATGCATTGAAACGTCAAGGCCG 16674 || || |||| || || || || Sbjct 1284018 GTACGCCCTGAAGCGCCAGGGACG 1283995 >seq91 Length=742804 Score = 102 bits (112), Expect = 1e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| || ||| | ||||||||||| ||||| || ||||||||| |||| Sbjct 42276 AGGCATCACCAAGCCCGCCATCAGGCGTCTGGCTCGCCGTGGAGGTGTCAAGCGTATCTC 42217 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| || |||| | | ||| | ||| | |||||| ||| || ||| Sbjct 42216 TGGCCTCATCTACGAGGAGACCAGGGGTGTGCTCAAGGTGTTCCTCGAGAATGTGATCAG 42157 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 |||||| | ||| || |||||||| | ||||||||||| || | || | || Sbjct 42156 GGATGCTGTGACCTACACTGAGCACGCCCGCAGGAAGACTGTCACAGCCTTCGACGTTGT 42097 Query 16651 CTATGCATTGAAACGTCAAGGCCG 16674 || || |||| || || || || Sbjct 42096 GTACGCCCTGAAGCGCCAGGGACG 42073 >seq4 Length=1187754 Score = 102 bits (112), Expect = 1e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || ||| | ||||||||||| ||||| || ||||||||| |||| Sbjct 952482 AGGTATCACAAAGCCTGCCATCAGGCGTCTGGCTCGCCGTGGAGGTGTCAAGCGTATCTC 952541 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || | |||| || |||| | | || | ||| | ||||| ||| ||| ||| Sbjct 952542 AGGCCTCATCTACGAGGAGACCAGGGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCAG 952601 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 |||||| || ||| |||||||||||| | ||||||||||| || | || | || Sbjct 952602 GGATGCTGTCACCTACACCGAGCACGCTCGCAGGAAGACTGTCACAGCCTTTGACGTGGT 952661 Query 16651 CTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || || | || || || || || | | ||||| || || ||||| Sbjct 952662 GTACGCCCTCAAGCGCCAGGGGCGCACCCTGTATGGCTTCGGCGGTTAA 952710 >seq102 Length=2901463 Score = 93.3 bits (102), Expect = 7e-15 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || ||| | ||||||||||| ||||| || ||||||||| || Sbjct 2681066 AGGCATCACAAAGCCTGCCATCAGGCGTCTGGCTCGCCGTGGAGGTGTCAAGCGTATCAG 2681125 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| || |||| |||| || | ||| | ||||| ||| || ||| Sbjct 2681126 TGGTCTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTGTTCCTTGAGAATGTGATCAG 2681185 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 || ||| || || || |||||||| | ||||||||||| || | || | || Sbjct 2681186 GGACGCTGTCACATACACAGAGCACGCCCGCAGGAAGACTGTCACAGCCTTTGACGTTGT 2681245 Query 16651 CTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || || |||| ||||| || || | | || || |||||| | ||| Sbjct 2681246 GTACGCTCTGAAGCGTCAGGGACGCACCCTGTACGGCTTTGGAGGCTAA 2681294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075103083458